Variant report

Variant	rs41286906
Chromosome Location	chr10:92221239-92221240
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RPP30-6	chr10:92220529-92221258	XLOC_008556

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10785954	1.00[ASN][1000 genomes]
rs10785955	1.00[ASN][1000 genomes]
rs10881786	1.00[ASN][1000 genomes]
rs10881787	1.00[ASN][1000 genomes]
rs10881789	1.00[ASN][1000 genomes]
rs10881790	1.00[ASN][1000 genomes]
rs10881791	1.00[ASN][1000 genomes]
rs10881792	1.00[ASN][1000 genomes]
rs10881794	1.00[ASN][1000 genomes]
rs10881795	1.00[ASN][1000 genomes]
rs10881796	1.00[ASN][1000 genomes]
rs10881797	1.00[ASN][1000 genomes]
rs10881798	1.00[ASN][1000 genomes]
rs11186140	1.00[ASN][1000 genomes]
rs11186142	1.00[ASN][1000 genomes]
rs11186143	1.00[ASN][1000 genomes]
rs11186145	1.00[ASN][1000 genomes]
rs11186154	1.00[ASN][1000 genomes]
rs11186156	1.00[ASN][1000 genomes]
rs11186159	1.00[ASN][1000 genomes]
rs11186160	1.00[ASN][1000 genomes]
rs11186161	1.00[ASN][1000 genomes]
rs11186163	1.00[ASN][1000 genomes]
rs11186165	1.00[ASN][1000 genomes]
rs11186167	1.00[ASN][1000 genomes]
rs11186175	1.00[ASN][1000 genomes]
rs11186177	1.00[ASN][1000 genomes]
rs11186178	1.00[ASN][1000 genomes]
rs11186185	1.00[ASN][1000 genomes]
rs11186191	1.00[ASN][1000 genomes]
rs11186194	1.00[ASN][1000 genomes]
rs12146172	1.00[ASN][1000 genomes]
rs12354589	1.00[ASN][1000 genomes]
rs12357395	1.00[ASN][1000 genomes]
rs12357661	1.00[ASN][1000 genomes]
rs12357679	1.00[ASN][1000 genomes]
rs12358059	1.00[ASN][1000 genomes]
rs12358128	1.00[ASN][1000 genomes]
rs12359371	1.00[ASN][1000 genomes]
rs12359974	1.00[ASN][1000 genomes]
rs12360131	1.00[ASN][1000 genomes]
rs1341818	1.00[ASN][1000 genomes]
rs1341824	1.00[ASN][1000 genomes]
rs1341825	1.00[ASN][1000 genomes]
rs1341826	1.00[ASN][1000 genomes]
rs1418050	1.00[ASN][1000 genomes]
rs1418051	1.00[ASN][1000 genomes]
rs1571109	1.00[ASN][1000 genomes]
rs1572990	1.00[ASN][1000 genomes]
rs1572991	1.00[ASN][1000 genomes]
rs1891232	1.00[ASN][1000 genomes]
rs1935251	1.00[ASN][1000 genomes]
rs1935254	1.00[ASN][1000 genomes]
rs1935258	1.00[ASN][1000 genomes]
rs1938474	1.00[ASN][1000 genomes]
rs2148260	1.00[ASN][1000 genomes]
rs2153745	1.00[ASN][1000 genomes]
rs34426224	1.00[ASN][1000 genomes]
rs34884069	1.00[ASN][1000 genomes]
rs4509677	1.00[ASN][1000 genomes]
rs4567365	1.00[ASN][1000 genomes]
rs4933182	1.00[ASN][1000 genomes]
rs4933183	1.00[ASN][1000 genomes]
rs4933586	1.00[ASN][1000 genomes]
rs55937666	1.00[ASN][1000 genomes]
rs55983726	1.00[AFR][1000 genomes]
rs56065617	1.00[ASN][1000 genomes]
rs56158198	1.00[ASN][1000 genomes]
rs56294295	1.00[ASN][1000 genomes]
rs56331782	1.00[ASN][1000 genomes]
rs72822793	1.00[ASN][1000 genomes]
rs72824603	1.00[ASN][1000 genomes]
rs72824606	1.00[ASN][1000 genomes]
rs72824612	1.00[ASN][1000 genomes]
rs72824614	1.00[ASN][1000 genomes]
rs72824632	1.00[ASN][1000 genomes]
rs72824633	1.00[ASN][1000 genomes]
rs947440	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467430	chr10:91681344-92297943	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv551875	chr10:91681344-92297943	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv3375393	chr10:91880933-92243227	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2422237	chr10:91940542-92547558	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1037720	chr10:92063438-92259359	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1052753	chr10:92081093-92565617	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv467432	chr10:92082250-92559908	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv551879	chr10:92082250-92559908	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv467433	chr10:92083015-92598458	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv551880	chr10:92083015-92598458	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv516743	chr10:92083015-92605119	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv1036256	chr10:92083932-92459915	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv1049931	chr10:92083932-92605364	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
14	nsv948363	chr10:92084520-92614402	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
15	nsv551881	chr10:92090785-92457733	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
16	nsv551882	chr10:92090785-92598823	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
17	nsv1047255	chr10:92095431-92548184	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
18	nsv540744	chr10:92095431-92548184	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
19	nsv1054504	chr10:92099335-92590723	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
20	nsv895886	chr10:92113638-92246550	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
21	nsv1048343	chr10:92132092-92259359	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
22	nsv551883	chr10:92159044-92334588	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92220600-92221600	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr10:92220600-92223400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr10:92220800-92221400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr10:92220800-92221800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr10:92221000-92221600	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr10:92221200-92221600	Enhancers	Aorta	Aorta
7	chr10:92221200-92221800	Bivalent Enhancer	HUVEC	blood vessel
8	chr10:92221200-92221800	Enhancers	NH-A	brain
9	chr10:92221200-92222200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr10:92221200-92223400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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