Variant report
| Variant | rs41368853 |
|---|---|
| Chromosome Location | chr9:110417341-110417342 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:110248485..110251289-chr9:110415972..110418067,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000136826 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs12001098 | 0.84[EUR][1000 genomes] |
| rs12339806 | 0.91[EUR][1000 genomes] |
| rs12339850 | 0.90[EUR][1000 genomes] |
| rs12347544 | 0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12347609 | 0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12347622 | 0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12350134 | 0.90[EUR][1000 genomes] |
| rs12352414 | 0.91[EUR][1000 genomes] |
| rs28379887 | 0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28410234 | 0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28501144 | 0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28545042 | 0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28558750 | 0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28718553 | 0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28756961 | 0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55732410 | 0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57223814 | 0.96[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs58725849 | 0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60233772 | 0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7341759 | 0.91[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7341900 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs73653618 | 0.96[EUR][1000 genomes] |
| rs7868525 | 0.92[EUR][1000 genomes] |
| rs7875152 | 0.84[EUR][1000 genomes] |
| rs940291 | 0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831683 | chr9:110275212-110461288 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv893700 | chr9:110365337-110451516 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:110413000-110437000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
