Variant report

Variant	rs7341759
Chromosome Location	chr9:110402215-110402216
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12001098	0.90[EUR][1000 genomes]
rs12339806	0.83[EUR][1000 genomes]
rs12339850	0.82[EUR][1000 genomes]
rs12347544	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12347609	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12347622	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12350134	0.82[EUR][1000 genomes]
rs12352414	0.83[EUR][1000 genomes]
rs28379887	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28410234	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28501144	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28545042	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28558750	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28718553	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28756961	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs41368853	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55732410	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57223814	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58546718	0.82[ASN][1000 genomes]
rs58725849	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60233772	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7341900	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73653618	0.87[EUR][1000 genomes]
rs7868525	0.84[EUR][1000 genomes]
rs7875152	0.90[EUR][1000 genomes]
rs940291	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv831683	chr9:110275212-110461288	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv893700	chr9:110365337-110451516	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110400600-110407400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:110401200-110402400	Enhancers	Primary hematopoietic stem cells	blood
3	chr9:110401200-110402400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr9:110401200-110402400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:110401200-110402400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr9:110401200-110406800	Weak transcription	Placenta	Placenta
7	chr9:110401400-110402400	Enhancers	Fetal Muscle Trunk	muscle
8	chr9:110401400-110407600	Weak transcription	Psoas Muscle	Psoas
9	chr9:110401600-110410000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr9:110401800-110407000	Weak transcription	HUVEC	blood vessel
11	chr9:110402000-110402400	Enhancers	Fetal Thymus	thymus
12	chr9:110402000-110406800	Weak transcription	Fetal Muscle Leg	muscle
13	chr9:110402000-110407000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr9:110402000-110407200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:110402000-110407200	Weak transcription	Adipose Nuclei	Adipose
16	chr9:110402000-110407200	Weak transcription	Fetal Stomach	stomach
17	chr9:110402000-110407400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr9:110402000-110407400	Weak transcription	Fetal Lung	lung
19	chr9:110402000-110407400	Weak transcription	Lung	lung
20	chr9:110402000-110407400	Weak transcription	Ovary	ovary
21	chr9:110402000-110407400	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr9:110402000-110407400	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr9:110402000-110407400	Weak transcription	Stomach Mucosa	stomach
24	chr9:110402000-110407600	Weak transcription	Duodenum Mucosa	Duodenum
25	chr9:110402200-110406200	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr9:110402200-110406600	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr9:110402200-110407000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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