Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:110398297..110401226-chr9:110410750..110413610,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12001098	0.88[EUR][1000 genomes]
rs12339806	0.90[EUR][1000 genomes]
rs12339850	0.89[EUR][1000 genomes]
rs12347544	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12347609	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12347622	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12350134	0.89[EUR][1000 genomes]
rs12352414	0.88[EUR][1000 genomes]
rs28379887	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28410234	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28501144	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28545042	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28558750	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28718553	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28756961	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs41368853	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55732410	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58725849	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60233772	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7341759	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7341900	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73653618	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7868525	0.89[EUR][1000 genomes]
rs7875152	0.86[EUR][1000 genomes]
rs940291	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv831683	chr9:110275212-110461288	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv893700	chr9:110365337-110451516	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110407800-110412200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr9:110408000-110415400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr9:110408200-110412000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr9:110409600-110411600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr9:110409800-110413200	Enhancers	HSMM	muscle
6	chr9:110410000-110413200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:110410200-110411600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr9:110410600-110412600	Weak transcription	Fetal Muscle Leg	muscle
9	chr9:110410800-110412400	Weak transcription	HSMMtube	muscle
10	chr9:110410800-110412600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr9:110411000-110411400	Enhancers	NHDF-Ad	bronchial
12	chr9:110411000-110412400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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