Variant report

Variant	rs940291
Chromosome Location	chr9:110407952-110407953
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12001098	0.90[EUR][1000 genomes]
rs12339806	0.83[EUR][1000 genomes]
rs12339850	0.82[EUR][1000 genomes]
rs12347544	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12347609	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12347622	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12350134	0.82[EUR][1000 genomes]
rs12352414	0.81[EUR][1000 genomes]
rs2417802	0.82[AMR][1000 genomes]
rs28379887	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28410234	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28501144	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28545042	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28558750	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28718553	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28756961	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs41368853	0.87[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55732410	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57223814	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58725849	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60233772	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7341759	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7341900	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73653618	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7868525	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7875152	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv831683	chr9:110275212-110461288	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv893700	chr9:110365337-110451516	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv528269	chr9:110402957-110410888	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110401600-110410000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr9:110406200-110408800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr9:110406800-110408000	Enhancers	Fetal Muscle Leg	muscle
4	chr9:110406800-110408000	Enhancers	Placenta	Placenta
5	chr9:110406800-110408000	Enhancers	Left Ventricle	heart
6	chr9:110406800-110408200	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr9:110407000-110408000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr9:110407000-110408000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr9:110407000-110408000	Enhancers	Liver	Liver
10	chr9:110407000-110408000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr9:110407000-110408200	Enhancers	HUVEC	blood vessel
12	chr9:110407200-110408000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr9:110407200-110408200	Enhancers	Adipose Nuclei	Adipose
14	chr9:110407400-110408000	Enhancers	Primary hematopoietic stem cells	blood
15	chr9:110407400-110408000	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr9:110407400-110408000	Enhancers	Brain Angular Gyrus	brain
17	chr9:110407400-110408000	Enhancers	Brain Hippocampus Middle	brain
18	chr9:110407400-110408000	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr9:110407400-110408000	Enhancers	Fetal Lung	lung
20	chr9:110407400-110408000	Enhancers	Lung	lung
21	chr9:110407400-110408000	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr9:110407400-110408000	Enhancers	Right Atrium	heart
23	chr9:110407400-110408000	Enhancers	Sigmoid Colon	Sigmoid Colon
24	chr9:110407400-110408000	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr9:110407400-110408000	Bivalent Enhancer	Small Intestine	intestine
26	chr9:110407400-110408000	Enhancers	Stomach Mucosa	stomach
27	chr9:110407400-110408200	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr9:110407400-110408200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
29	chr9:110407600-110408000	Enhancers	Duodenum Mucosa	Duodenum
30	chr9:110407600-110408000	Bivalent Enhancer	Fetal Intestine Small	intestine
31	chr9:110407600-110408000	Enhancers	Rectal Mucosa Donor 29	rectum
32	chr9:110407600-110409000	Enhancers	Spleen	Spleen
33	chr9:110407600-110409600	Weak transcription	NHDF-Ad	bronchial
34	chr9:110407600-110409800	Weak transcription	HSMM	muscle
35	chr9:110407800-110409600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr9:110407800-110410200	Weak transcription	Ovary	ovary
37	chr9:110407800-110412200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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