Variant report

Variant	rs4141301
Chromosome Location	chr7:120568583-120568584
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:120567322..120569068-chr7:120589600..120592283,2	MCF-7	breast:
2	chr7:120547850..120549898-chr7:120568115..120570216,2	K562	blood:
3	chr7:120566255..120567870-chr7:120568141..120570899,2	MCF-7	breast:
4	chr7:120567399..120568924-chr7:120573182..120576035,2	K562	blood:

Variant related genes	Relation type
ENSG00000071243	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10238554	0.83[ASN][1000 genomes]
rs10252911	1.00[CEU][hapmap];0.82[ASN][1000 genomes]
rs10261886	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10272601	1.00[CEU][hapmap]
rs10282072	0.83[ASN][1000 genomes]
rs10464522	0.89[AMR][1000 genomes]
rs12154992	1.00[CEU][hapmap]
rs13438082	0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17132716	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs17143055	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1859316	1.00[CEU][hapmap];0.83[ASN][1000 genomes]
rs2158323	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2158324	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2189452	1.00[YRI][hapmap]
rs2402551	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2525708	0.82[ASN][1000 genomes]
rs3757556	1.00[CEU][hapmap]
rs3757557	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes]
rs3779387	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs3779388	1.00[YRI][hapmap]
rs3779389	1.00[YRI][hapmap]
rs4141309	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes]
rs4461820	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs56755229	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56922360	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57457261	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57818444	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59169713	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59189516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59567952	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59790582	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60612048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61043018	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6964344	1.00[CEU][hapmap]
rs6975372	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6979247	1.00[CEU][hapmap]
rs732568	0.82[ASN][1000 genomes]
rs73427831	0.85[AMR][1000 genomes]
rs73427834	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7776721	1.00[CEU][hapmap]
rs7779136	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7779149	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7779941	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7780130	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7780247	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7780690	0.89[AMR][1000 genomes]
rs7799562	0.89[AMR][1000 genomes]
rs7806629	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9648991	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9648992	0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9648993	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9649427	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9649428	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818826	chr7:120405335-120622836	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120567600-120568800	Weak transcription	HUVEC	blood vessel
2	chr7:120568000-120569200	Weak transcription	Primary monocytes fromperipheralblood	blood

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