Variant report

Variant	rs10272601
Chromosome Location	chr7:120594593-120594594
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:120590106..120593408-chr7:120593981..120596581,5	MCF-7	breast:
2	chr7:120588468..120596180-chr7:120604298..120610010,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000071243	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10225453	0.82[JPT][hapmap]
rs10238554	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10252911	1.00[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10257297	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10257475	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10261886	1.00[CEU][hapmap];0.83[ASN][1000 genomes]
rs10274689	0.82[JPT][hapmap]
rs10282072	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10464522	0.82[ASN][1000 genomes]
rs10953922	0.82[ASN][1000 genomes]
rs12154992	1.00[CEU][hapmap]
rs13438082	0.83[ASN][1000 genomes]
rs1557857	0.83[ASN][1000 genomes]
rs17132716	1.00[CEU][hapmap]
rs17142995	0.82[JPT][hapmap]
rs17143055	1.00[CEU][hapmap];0.83[ASN][1000 genomes]
rs1859316	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1859318	0.83[ASN][1000 genomes]
rs1859319	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs2074577	0.89[CHB][hapmap];0.81[ASN][1000 genomes]
rs2107276	0.85[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs2244863	0.89[CHB][hapmap];0.81[ASN][1000 genomes]
rs2244865	0.81[ASN][1000 genomes]
rs2248890	0.85[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs2525705	0.83[ASN][1000 genomes]
rs2525708	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2525709	0.82[ASN][1000 genomes]
rs2525712	0.81[ASN][1000 genomes]
rs2525713	0.81[ASN][1000 genomes]
rs2525719	0.81[ASN][1000 genomes]
rs2525737	0.81[ASN][1000 genomes]
rs2525743	0.82[ASN][1000 genomes]
rs2721341	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs2721347	0.82[JPT][hapmap]
rs2721354	0.94[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs2721363	0.89[CHB][hapmap];0.81[ASN][1000 genomes]
rs2721365	0.81[ASN][1000 genomes]
rs2721367	0.83[CHB][hapmap];0.81[ASN][1000 genomes]
rs2721372	0.81[ASN][1000 genomes]
rs3757556	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3757557	1.00[CEU][hapmap]
rs3779386	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs3779387	1.00[CEU][hapmap]
rs3823859	0.81[JPT][hapmap]
rs4141301	1.00[CEU][hapmap]
rs4141309	1.00[CEU][hapmap]
rs41688	0.83[CHB][hapmap]
rs41690	0.89[CHB][hapmap];0.81[ASN][1000 genomes]
rs4461820	1.00[CEU][hapmap];0.83[ASN][1000 genomes]
rs6466759	0.82[JPT][hapmap]
rs6466760	0.82[JPT][hapmap]
rs6466761	0.81[JPT][hapmap]
rs6466762	0.81[JPT][hapmap]
rs6953454	0.82[JPT][hapmap]
rs6959328	0.86[JPT][hapmap]
rs6964344	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6971619	0.81[ASN][1000 genomes]
rs6971854	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs6975372	1.00[CEU][hapmap];0.83[ASN][1000 genomes]
rs6979247	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs732568	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73429803	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs745167	0.82[ASN][1000 genomes]
rs7776721	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7781985	0.81[JPT][hapmap]
rs9649429	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs996903	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818826	chr7:120405335-120622836	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120591600-120596400	Weak transcription	Left Ventricle	heart
2	chr7:120591600-120600200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:120591600-120606600	Weak transcription	Lung	lung
4	chr7:120591600-120608000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:120591600-120608000	Weak transcription	Esophagus	oesophagus
6	chr7:120591600-120608000	Weak transcription	Gastric	stomach
7	chr7:120591600-120608000	Weak transcription	Spleen	Spleen
8	chr7:120591600-120611200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr7:120591600-120612800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr7:120591600-120613200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr7:120591600-120613200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr7:120591600-120627800	Weak transcription	Pancreas	Pancrea
13	chr7:120591800-120606400	Weak transcription	Ovary	ovary
14	chr7:120591800-120618600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr7:120592000-120596800	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr7:120592200-120595200	Weak transcription	Colonic Mucosa	Colon
17	chr7:120592200-120595400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr7:120592200-120597000	Weak transcription	Fetal Muscle Leg	muscle
19	chr7:120592200-120597600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr7:120592200-120598400	Weak transcription	Thymus	Thymus
21	chr7:120592200-120599400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr7:120592200-120599600	Strong transcription	Fetal Thymus	thymus
23	chr7:120592200-120611000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr7:120592400-120594600	Weak transcription	Brain Anterior Caudate	brain
25	chr7:120592400-120594800	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr7:120592400-120595200	Weak transcription	NHLF	lung
27	chr7:120592400-120595600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr7:120592400-120595600	Weak transcription	Fetal Brain Female	brain
29	chr7:120592400-120595600	Weak transcription	Hela-S3	cervix
30	chr7:120592400-120595600	Weak transcription	HepG2	liver
31	chr7:120592400-120595800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr7:120592400-120597600	Weak transcription	Brain Angular Gyrus	brain
33	chr7:120592400-120598600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr7:120592400-120598600	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr7:120592400-120599400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr7:120592400-120600200	Strong transcription	Primary B cells from peripheral blood	blood
37	chr7:120592400-120606400	Weak transcription	Fetal Brain Male	brain
38	chr7:120592400-120606400	Weak transcription	NHEK	skin
39	chr7:120592400-120607800	Weak transcription	HSMMtube	muscle
40	chr7:120592400-120608000	Weak transcription	Psoas Muscle	Psoas
41	chr7:120592400-120614800	Weak transcription	Small Intestine	intestine
42	chr7:120592400-120617000	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr7:120592400-120618600	Weak transcription	Right Ventricle	heart
44	chr7:120592400-120621600	Weak transcription	Aorta	Aorta
45	chr7:120592400-120628000	Weak transcription	Stomach Mucosa	stomach
46	chr7:120592600-120597600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr7:120592800-120595800	Weak transcription	Brain Cingulate Gyrus	brain
48	chr7:120592800-120597200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
49	chr7:120592800-120598000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr7:120593000-120594800	Strong transcription	NH-A	brain

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