Variant report

Variant	rs13438082
Chromosome Location	chr7:120572821-120572822
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:120570512..120572565-chr7:120572771..120574747,2	MCF-7	breast:
2	chr7:120558221..120561390-chr7:120571663..120574345,3	MCF-7	breast:
3	chr7:120569011..120571140-chr7:120572533..120574457,3	K562	blood:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10238554	0.90[ASN][1000 genomes]
rs10252911	1.00[CEU][hapmap];0.84[CHB][hapmap];0.80[JPT][hapmap];0.89[ASN][1000 genomes]
rs10257297	0.85[ASN][1000 genomes]
rs10257475	0.83[ASN][1000 genomes]
rs10261886	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10272601	1.00[CEU][hapmap];0.83[ASN][1000 genomes]
rs10282072	0.90[ASN][1000 genomes]
rs10464522	0.84[AMR][1000 genomes]
rs12154992	1.00[CEU][hapmap]
rs1557857	0.80[ASN][1000 genomes]
rs17132716	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs17143001	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs17143009	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs17143055	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1859316	1.00[CEU][hapmap];0.84[CHB][hapmap];0.90[ASN][1000 genomes]
rs1859318	0.80[ASN][1000 genomes]
rs1859319	0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs2107276	0.84[CHB][hapmap]
rs2158323	0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2158324	0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2189452	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs2402551	0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2525705	0.80[ASN][1000 genomes]
rs2525708	0.89[ASN][1000 genomes]
rs3757556	1.00[CEU][hapmap];0.83[ASN][1000 genomes]
rs3757557	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3779386	0.84[CHB][hapmap]
rs3779387	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs3779388	0.94[CHB][hapmap];0.95[JPT][hapmap]
rs3779389	0.94[CHB][hapmap];0.89[JPT][hapmap]
rs4141301	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4141309	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4461820	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56755229	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56922360	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs57457261	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs57818444	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59169713	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs59189516	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59567952	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs59790582	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60612048	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61043018	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6964344	1.00[CEU][hapmap];0.83[ASN][1000 genomes]
rs6971854	0.84[CHB][hapmap]
rs6975372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6979247	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[ASN][1000 genomes]
rs732568	0.89[ASN][1000 genomes]
rs73427831	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73427834	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73429803	0.83[ASN][1000 genomes]
rs7776721	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[ASN][1000 genomes]
rs7779136	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7779149	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7779941	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7780130	0.80[AMR][1000 genomes]
rs7780247	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7780690	0.84[AMR][1000 genomes]
rs7799562	0.84[AMR][1000 genomes]
rs7806629	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9648991	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9648992	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9648993	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9649427	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9649428	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9649429	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818826	chr7:120405335-120622836	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120571600-120574000	Enhancers	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links