Variant report

Variant	rs10282072
Chromosome Location	chr7:120584314-120584315
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:120583999..120585658-chr7:120721137..120722799,2	K562	blood:
2	chr7:120582973..120587570-chr7:120719112..120724083,6	K562	blood:
3	chr7:120497411..120498960-chr7:120582956..120584849,2	K562	blood:
4	chr7:120578692..120580456-chr7:120583647..120585611,2	K562	blood:
5	chr7:120572871..120575820-chr7:120582834..120585642,2	K562	blood:

Variant related genes	Relation type
ENSG00000106025	Chromatin interaction
ENSG00000212628	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10238554	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10252911	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10257297	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10257475	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10261886	0.90[ASN][1000 genomes]
rs10272601	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10953922	0.87[ASN][1000 genomes]
rs13438082	0.90[ASN][1000 genomes]
rs1557857	0.89[ASN][1000 genomes]
rs17143055	0.90[ASN][1000 genomes]
rs1859316	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1859318	0.89[ASN][1000 genomes]
rs1859319	0.89[ASN][1000 genomes]
rs2040762	0.83[ASN][1000 genomes]
rs2107276	0.88[ASN][1000 genomes]
rs2524951	0.84[ASN][1000 genomes]
rs2525705	0.89[ASN][1000 genomes]
rs2525708	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2525709	0.87[ASN][1000 genomes]
rs2525743	0.87[ASN][1000 genomes]
rs2721341	0.87[ASN][1000 genomes]
rs2721354	0.83[ASN][1000 genomes]
rs2721364	0.83[ASN][1000 genomes]
rs3757556	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3779386	0.83[ASN][1000 genomes]
rs4141301	0.83[ASN][1000 genomes]
rs4461820	0.90[ASN][1000 genomes]
rs59189516	0.83[ASN][1000 genomes]
rs59790582	0.81[ASN][1000 genomes]
rs60612048	0.83[ASN][1000 genomes]
rs61452531	0.83[ASN][1000 genomes]
rs6964344	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6971854	0.83[ASN][1000 genomes]
rs6975372	0.90[ASN][1000 genomes]
rs6979247	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs732568	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73427805	0.83[ASN][1000 genomes]
rs73429803	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs745167	0.87[ASN][1000 genomes]
rs7776721	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7800318	0.82[ASN][1000 genomes]
rs9649429	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818826	chr7:120405335-120622836	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv967472	chr7:120581340-120591647	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120574000-120585200	Weak transcription	Colon Smooth Muscle	Colon
2	chr7:120582000-120585000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr7:120582200-120585000	Weak transcription	Liver	Liver
4	chr7:120582200-120588600	Weak transcription	K562	blood
5	chr7:120582400-120585400	Enhancers	HUVEC	blood vessel
6	chr7:120583800-120585200	Weak transcription	Fetal Intestine Large	intestine
7	chr7:120584000-120585000	Weak transcription	Fetal Kidney	kidney
8	chr7:120584200-120585200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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