Variant report

Variant	rs9649429
Chromosome Location	chr7:120532748-120532749
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:120531641..120534094-chr7:120717673..120720325,2	K562	blood:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10238554	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10252911	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10257297	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10257475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10261886	0.83[ASN][1000 genomes]
rs10272601	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10274689	0.80[ASN][1000 genomes]
rs10279837	0.85[ASN][1000 genomes]
rs10282072	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10953922	0.83[ASN][1000 genomes]
rs11982493	0.83[ASN][1000 genomes]
rs13340548	0.81[AFR][1000 genomes]
rs13438082	0.83[ASN][1000 genomes]
rs1557857	0.82[ASN][1000 genomes]
rs17142995	0.81[ASN][1000 genomes]
rs17143055	0.83[ASN][1000 genomes]
rs1859316	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1859318	0.82[ASN][1000 genomes]
rs1859319	0.82[ASN][1000 genomes]
rs2040762	0.90[ASN][1000 genomes]
rs2107276	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2524951	0.88[ASN][1000 genomes]
rs2525705	0.82[ASN][1000 genomes]
rs2525708	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2525709	0.83[ASN][1000 genomes]
rs2525743	0.83[ASN][1000 genomes]
rs2721339	0.82[ASN][1000 genomes]
rs2721341	0.83[ASN][1000 genomes]
rs2721343	0.85[ASN][1000 genomes]
rs2721347	0.85[ASN][1000 genomes]
rs2721364	0.90[ASN][1000 genomes]
rs3757556	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3757557	0.80[ASN][1000 genomes]
rs3779386	0.88[ASN][1000 genomes]
rs3823859	0.80[ASN][1000 genomes]
rs4141309	0.81[ASN][1000 genomes]
rs4461820	0.83[ASN][1000 genomes]
rs56755229	0.83[ASN][1000 genomes]
rs56922360	0.84[ASN][1000 genomes]
rs57457261	0.84[ASN][1000 genomes]
rs57818444	0.83[ASN][1000 genomes]
rs59169713	0.84[ASN][1000 genomes]
rs59567952	0.81[ASN][1000 genomes]
rs61043018	0.83[ASN][1000 genomes]
rs61452531	0.90[ASN][1000 genomes]
rs6466762	0.80[ASN][1000 genomes]
rs6958947	0.80[ASN][1000 genomes]
rs6964344	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6971854	0.88[ASN][1000 genomes]
rs6975372	0.83[ASN][1000 genomes]
rs6979247	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs732568	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73427805	0.88[ASN][1000 genomes]
rs73427831	0.81[ASN][1000 genomes]
rs73427834	0.83[ASN][1000 genomes]
rs73427866	0.84[ASN][1000 genomes]
rs73429803	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs745167	0.83[ASN][1000 genomes]
rs7776721	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7779136	0.84[ASN][1000 genomes]
rs7779149	0.84[ASN][1000 genomes]
rs7779941	0.84[ASN][1000 genomes]
rs7780247	0.84[ASN][1000 genomes]
rs7781985	0.80[ASN][1000 genomes]
rs7800318	0.87[ASN][1000 genomes]
rs7806629	0.84[ASN][1000 genomes]
rs9648991	0.83[ASN][1000 genomes]
rs9648992	0.84[ASN][1000 genomes]
rs9648993	0.84[ASN][1000 genomes]
rs9649427	0.84[ASN][1000 genomes]
rs9649428	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818826	chr7:120405335-120622836	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv274964	chr7:120522471-120549440	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120531200-120536600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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