Variant report

Variant	rs10257297
Chromosome Location	chr7:120555671-120555672
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:120554091..120556706-chr7:120557513..120559992,2	K562	blood:
2	chr7:120555523..120558185-chr7:120561718..120564428,2	K562	blood:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10238554	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10252911	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10257475	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10261886	0.85[ASN][1000 genomes]
rs10272601	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10274689	0.80[ASN][1000 genomes]
rs10279837	0.83[ASN][1000 genomes]
rs10282072	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10953922	0.84[ASN][1000 genomes]
rs11982493	0.83[ASN][1000 genomes]
rs13438082	0.85[ASN][1000 genomes]
rs1557857	0.83[ASN][1000 genomes]
rs17142995	0.81[ASN][1000 genomes]
rs17143055	0.85[ASN][1000 genomes]
rs1859316	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1859318	0.83[ASN][1000 genomes]
rs1859319	0.83[ASN][1000 genomes]
rs2040762	0.89[ASN][1000 genomes]
rs2107276	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2524951	0.89[ASN][1000 genomes]
rs2525705	0.83[ASN][1000 genomes]
rs2525708	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2525709	0.84[ASN][1000 genomes]
rs2525743	0.84[ASN][1000 genomes]
rs2721339	0.83[ASN][1000 genomes]
rs2721341	0.84[ASN][1000 genomes]
rs2721343	0.84[ASN][1000 genomes]
rs2721347	0.83[ASN][1000 genomes]
rs2721364	0.89[ASN][1000 genomes]
rs3757556	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3757557	0.80[ASN][1000 genomes]
rs3779386	0.88[ASN][1000 genomes]
rs3823859	0.80[ASN][1000 genomes]
rs4141309	0.81[ASN][1000 genomes]
rs4461820	0.85[ASN][1000 genomes]
rs56755229	0.84[ASN][1000 genomes]
rs56922360	0.82[ASN][1000 genomes]
rs57457261	0.82[ASN][1000 genomes]
rs57818444	0.84[ASN][1000 genomes]
rs59169713	0.82[ASN][1000 genomes]
rs59567952	0.80[ASN][1000 genomes]
rs59790582	0.80[ASN][1000 genomes]
rs61043018	0.84[ASN][1000 genomes]
rs61452531	0.89[ASN][1000 genomes]
rs6466762	0.80[ASN][1000 genomes]
rs6958947	0.80[ASN][1000 genomes]
rs6964344	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6971854	0.88[ASN][1000 genomes]
rs6975372	0.85[ASN][1000 genomes]
rs6979247	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs732568	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73427805	0.88[ASN][1000 genomes]
rs73427831	0.81[ASN][1000 genomes]
rs73427834	0.83[ASN][1000 genomes]
rs73427866	0.84[ASN][1000 genomes]
rs73429803	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs745167	0.84[ASN][1000 genomes]
rs7776721	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7779136	0.82[ASN][1000 genomes]
rs7779149	0.82[ASN][1000 genomes]
rs7779941	0.82[ASN][1000 genomes]
rs7780247	0.82[ASN][1000 genomes]
rs7781985	0.80[ASN][1000 genomes]
rs7800318	0.87[ASN][1000 genomes]
rs7806629	0.82[ASN][1000 genomes]
rs9648991	0.81[ASN][1000 genomes]
rs9648992	0.82[ASN][1000 genomes]
rs9648993	0.82[ASN][1000 genomes]
rs9649427	0.82[ASN][1000 genomes]
rs9649428	0.81[ASN][1000 genomes]
rs9649429	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818826	chr7:120405335-120622836	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv437030	chr7:120550667-120562313	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120555000-120556200	Enhancers	Muscle Satellite Cultured Cells	--
2	chr7:120555600-120556000	Enhancers	HSMM	muscle

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