The 2.0 version of rSNPBase

Variant report

Variant rs41446245
Chromosome Location chr19:43029128-43029129
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:55 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:43003200-43030600 Weak transcription Duodenum Smooth Muscle Duodenum
2 chr19:43003400-43029400 Weak transcription Small Intestine intestine
3 chr19:43006200-43029800 Weak transcription Primary T helper cells PMA-I stimulated --
4 chr19:43013800-43032000 Weak transcription Primary T killer naive cells fromperipheralblood blood
5 chr19:43015600-43030800 Weak transcription Left Ventricle heart
6 chr19:43016000-43032400 Weak transcription Brain Anterior Caudate brain
7 chr19:43016600-43029400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
8 chr19:43016600-43031800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
9 chr19:43017400-43031400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
10 chr19:43018200-43030400 Weak transcription Rectal Smooth Muscle rectum
11 chr19:43019000-43029200 Weak transcription Stomach Mucosa stomach
12 chr19:43020400-43030400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
13 chr19:43023200-43032400 Weak transcription Skeletal Muscle Male skeletal muscle
14 chr19:43023600-43029600 Weak transcription Pancreatic Islets Pancreatic Islet
15 chr19:43023600-43031600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
16 chr19:43023600-43032200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
17 chr19:43023600-43033200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
18 chr19:43025000-43030400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
19 chr19:43025600-43032000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
20 chr19:43025600-43032400 Weak transcription Right Ventricle heart
21 chr19:43026000-43030400 Weak transcription Primary T cells fromperipheralblood blood
22 chr19:43026200-43032800 Weak transcription Fetal Stomach stomach
23 chr19:43026400-43029800 Weak transcription Primary T cells from cord blood blood
24 chr19:43027200-43029200 Enhancers Primary hematopoietic stem cells blood
25 chr19:43027400-43030000 Flanking Active TSS Primary neutrophils fromperipheralblood blood
26 chr19:43027600-43029200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
27 chr19:43027600-43030400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
28 chr19:43027600-43030400 Weak transcription Lung lung
29 chr19:43027800-43030400 Weak transcription Sigmoid Colon Sigmoid Colon
30 chr19:43028200-43029200 Transcr. at gene 5' and 3' Fetal Adrenal Gland Adrenal Gland
31 chr19:43028200-43030400 Genic enhancers Liver Liver
32 chr19:43028200-43032400 Enhancers Primary T helper naive cells fromperipheralblood blood
33 chr19:43028400-43029200 Enhancers Esophagus oesophagus
34 chr19:43028400-43030400 Genic enhancers Foreskin Melanocyte Primary Cells skin01 Skin
35 chr19:43028400-43031400 Transcr. at gene 5' and 3' HepG2 liver
36 chr19:43028400-43032000 Enhancers Primary T helper cells fromperipheralblood blood
37 chr19:43028600-43029400 Enhancers Primary T regulatory cells fromperipheralblood blood
38 chr19:43028600-43029600 Genic enhancers Fetal Intestine Small intestine
39 chr19:43028600-43032200 Weak transcription Primary monocytes fromperipheralblood blood
40 chr19:43028800-43029400 Flanking Active TSS Duodenum Mucosa Duodenum
41 chr19:43028800-43030600 Enhancers Breast Myoepithelial Primary Cells Breast
42 chr19:43028800-43030800 Weak transcription Primary B cells from peripheral blood blood
43 chr19:43028800-43031800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
44 chr19:43028800-43032000 Weak transcription GM12878-XiMat blood
45 chr19:43028800-43032400 Weak transcription Monocytes-CD14+_RO01746 blood
46 chr19:43029000-43029200 Enhancers Gastric stomach
47 chr19:43029000-43029200 Flanking Active TSS Rectal Mucosa Donor 29 rectum
48 chr19:43029000-43029200 Flanking Active TSS Rectal Mucosa Donor 31 rectum
49 chr19:43029000-43030400 Weak transcription Adipose Nuclei Adipose
50 chr19:43029000-43030600 Weak transcription Primary B cells from cord blood blood

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015