Variant report

Variant	rs10421902
Chromosome Location	chr19:43001294-43001295
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10401224	0.86[YRI][hapmap]
rs10402697	1.00[EUR][1000 genomes]
rs10403856	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10404650	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10406800	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10407155	1.00[TSI][hapmap]
rs10407842	1.00[AMR][1000 genomes]
rs10408986	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10409428	0.86[YRI][hapmap]
rs10409433	1.00[AMR][1000 genomes]
rs10410129	1.00[AMR][1000 genomes]
rs10410174	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10410653	1.00[AMR][1000 genomes]
rs10411498	1.00[ASW][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes]
rs10411565	1.00[EUR][1000 genomes]
rs10411908	1.00[AMR][1000 genomes]
rs10413484	1.00[AMR][1000 genomes]
rs10414502	1.00[EUR][1000 genomes]
rs10414695	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10415759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10416535	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10417606	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10418102	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10418312	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10418988	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10420327	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10421331	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10421409	1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];1.00[AMR][1000 genomes]
rs10421857	0.93[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10422301	1.00[AMR][1000 genomes]
rs10423959	1.00[TSI][hapmap]
rs10423978	1.00[TSI][hapmap]
rs10425003	1.00[AMR][1000 genomes]
rs10426284	1.00[AMR][1000 genomes]
rs10469287	1.00[EUR][1000 genomes]
rs11878183	1.00[EUR][1000 genomes]
rs11878207	0.93[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11879211	1.00[EUR][1000 genomes]
rs11880356	0.86[YRI][hapmap];1.00[AMR][1000 genomes]
rs13343322	1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];1.00[AMR][1000 genomes]
rs13343388	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13343719	1.00[AMR][1000 genomes]
rs13343761	1.00[ASW][hapmap];1.00[AMR][1000 genomes]
rs13343834	1.00[AMR][1000 genomes]
rs13343966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13346831	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13346879	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2229614	1.00[ASW][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28402882	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28463673	1.00[AMR][1000 genomes]
rs28469564	1.00[AMR][1000 genomes]
rs28474957	1.00[AMR][1000 genomes]
rs28483598	1.00[AMR][1000 genomes]
rs28496975	1.00[AMR][1000 genomes]
rs28545051	1.00[EUR][1000 genomes]
rs28657829	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28663042	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28675764	1.00[AMR][1000 genomes]
rs28686771	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28699037	1.00[AMR][1000 genomes]
rs33919763	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35707383	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36089262	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41407146	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41446245	1.00[EUR][1000 genomes]
rs59870753	1.00[AMR][1000 genomes]
rs60950516	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7246232	1.00[ASW][hapmap];0.92[LWK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7248473	1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes]
rs7248543	1.00[EUR][1000 genomes]
rs7254853	1.00[AMR][1000 genomes]
rs7255343	1.00[AMR][1000 genomes]
rs7258727	0.93[YRI][hapmap];1.00[AMR][1000 genomes]
rs7258854	1.00[TSI][hapmap]
rs73552879	1.00[AMR][1000 genomes]
rs73558432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73560411	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8099885	1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];1.00[AMR][1000 genomes]
rs8109258	1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];1.00[AMR][1000 genomes]
rs8111527	1.00[EUR][1000 genomes]
rs9304602	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526186	chr19:42676481-43203507	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases
2	esv2422471	chr19:42733141-43669485	Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases
3	esv2422468	chr19:42991289-43669027	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42981200-43002000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr19:42993000-43001400	Enhancers	HepG2	liver
3	chr19:42997000-43003800	Enhancers	Fetal Intestine Small	intestine
4	chr19:42998000-43004800	Enhancers	Fetal Intestine Large	intestine
5	chr19:42998200-43001400	Enhancers	GM12878-XiMat	blood
6	chr19:42998200-43002000	Enhancers	Liver	Liver
7	chr19:42999600-43003400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr19:43000000-43001800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr19:43000000-43003000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr19:43000200-43001800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr19:43000200-43002000	Weak transcription	Spleen	Spleen
12	chr19:43000400-43003000	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr19:43000400-43003000	Enhancers	Primary B cells from peripheral blood	blood
14	chr19:43000600-43001800	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr19:43000600-43002000	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr19:43000600-43002600	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr19:43000600-43003600	Enhancers	Fetal Kidney	kidney
18	chr19:43000600-43003800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr19:43000800-43001600	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr19:43000800-43001600	Enhancers	A549	lung
21	chr19:43000800-43002000	Enhancers	Duodenum Mucosa	Duodenum
22	chr19:43000800-43003000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr19:43000800-43003200	Enhancers	Primary B cells from cord blood	blood
24	chr19:43000800-43003400	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr19:43000800-43003400	Enhancers	Small Intestine	intestine
26	chr19:43001000-43002000	Weak transcription	Placenta	Placenta
27	chr19:43001000-43002800	Enhancers	Adipose Nuclei	Adipose
28	chr19:43001000-43003200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr19:43001000-43003600	Enhancers	Brain Hippocampus Middle	brain
30	chr19:43001200-43001400	Enhancers	Primary hematopoietic stem cells	blood
31	chr19:43001200-43001800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr19:43001200-43002000	Weak transcription	Left Ventricle	heart
33	chr19:43001200-43002000	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr19:43001200-43002600	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr19:43001200-43003800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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