Variant report

Variant	rs4145436
Chromosome Location	chr1:172470830-172470831
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:172466607..172473945-chr1:172474467..172485611,18	MCF-7	breast:
2	chr1:172468168..172471108-chr1:172473106..172474837,2	K562	blood:
3	chr1:172418892..172420549-chr1:172469150..172470945,2	MCF-7	breast:
4	chr1:172464666..172471866-chr1:172497727..172502912,19	MCF-7	breast:
5	chr1:172464396..172473941-chr1:172479690..172484856,11	MCF-7	breast:
6	chr1:172418873..172420549-chr1:172468887..172471154,2	MCF-7	breast:
7	chr1:172469701..172471621-chr1:172497308..172500120,2	K562	blood:
8	chr1:172464975..172470841-chr1:172497747..172503666,11	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000180999	Chromatin interaction
ENSG00000094975	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10157500	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10157519	0.92[ASN][1000 genomes]
rs10218613	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10489280	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10798040	0.91[ASN][1000 genomes]
rs10911856	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12087284	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2097498	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2285144	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2422144	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2472550	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2472552	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3752515	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3768444	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs5014539	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6424973	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6686080	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6686157	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6695152	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7539231	0.80[EUR][1000 genomes]
rs7539443	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9943276	0.93[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172464800-172471000	Enhancers	Placenta Amnion	Placenta Amnion
2	chr1:172466800-172476400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr1:172466800-172477200	Weak transcription	Left Ventricle	heart
4	chr1:172469600-172472000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:172470000-172473800	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr1:172470800-172471000	Enhancers	Esophagus	oesophagus
7	chr1:172470800-172479200	Weak transcription	Primary neutrophils fromperipheralblood	blood

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