Variant report

No.	Distal block	Cell Line	Cell type
1	chr1:172484339..172486754-chr1:172500823..172503180,2	MCF-7	breast:
2	chr1:172485002..172486820-chr1:172486838..172488718,2	K562	blood:
3	chr1:172483189..172485806-chr1:172499589..172502830,4	K562	blood:
4	chr1:172480916..172486057-chr1:172500075..172503818,11	MCF-7	breast:
5	chr1:172466607..172473945-chr1:172474467..172485611,18	MCF-7	breast:
6	chr1:172483753..172487380-chr1:172490870..172493314,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000094975	Chromatin interaction

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10157500	0.89[ASN][1000 genomes]
rs10218613	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10489280	0.95[ASN][1000 genomes]
rs10752994	0.85[CHD][hapmap];0.95[JPT][hapmap]
rs10798040	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10911856	0.98[ASN][1000 genomes]
rs12087284	0.85[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1894625	0.82[JPT][hapmap]
rs1894626	0.92[CEU][hapmap]
rs2097498	0.98[ASN][1000 genomes]
rs2285144	0.96[ASN][1000 genomes]
rs2422144	0.98[ASN][1000 genomes]
rs2472550	0.85[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2472552	0.88[CHD][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs2859228	0.84[CEU][hapmap]
rs3752515	0.82[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs3768444	0.85[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4145436	0.92[ASN][1000 genomes]
rs5014539	0.98[ASN][1000 genomes]
rs6424973	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs6686080	0.85[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6686157	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6695152	0.91[ASN][1000 genomes]
rs7531652	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs7539443	0.96[ASN][1000 genomes]
rs9425646	1.00[JPT][hapmap]
rs9943276	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172480800-172487800	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr1:172484200-172485200	Enhancers	K562	blood
3	chr1:172484400-172487600	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr1:172484600-172487600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr1:172484600-172487800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr1:172484800-172485400	Enhancers	Primary hematopoietic stem cells	blood
7	chr1:172484800-172487800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr1:172485000-172485200	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr1:172485000-172485400	Enhancers	Primary hematopoietic stem cells short term culture	blood

Quick Search: