Variant report

Variant	rs1894626
Chromosome Location	chr1:172607949-172607950
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:172605365..172608863-chr1:172611865..172614663,3	K562	blood:
2	chr1:172596279..172598821-chr1:172607149..172609818,2	MCF-7	breast:
3	chr1:172607939..172610004-chr1:172610996..172613458,2	MCF-7	breast:
4	chr1:172607158..172609783-chr1:172617017..172618677,2	K562	blood:
5	chr1:172603799..172606030-chr1:172606827..172609383,2	MCF-7	breast:
6	chr1:172412107..172414513-chr1:172606008..172608594,2	K562	blood:
7	chr1:172605365..172608038-chr1:172613120..172614663,2	K562	blood:

Variant related genes	Relation type
ENSG00000135845	Chromatin interaction
ENSG00000180999	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10157519	0.92[CEU][hapmap]
rs1041902	0.85[EUR][1000 genomes]
rs1041903	0.86[EUR][1000 genomes]
rs10752994	0.86[CHB][hapmap];0.86[ASN][1000 genomes]
rs10798040	0.92[CEU][hapmap]
rs10912058	0.88[ASN][1000 genomes]
rs10912080	0.95[ASN][1000 genomes]
rs10912083	0.94[ASN][1000 genomes]
rs10912084	0.94[ASN][1000 genomes]
rs10912097	0.87[EUR][1000 genomes]
rs12087284	0.81[CHB][hapmap];0.81[ASN][1000 genomes]
rs12121051	0.95[ASN][1000 genomes]
rs12146100	0.92[ASN][1000 genomes]
rs1894625	0.91[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs2097492	0.92[ASN][1000 genomes]
rs2097493	0.91[ASN][1000 genomes]
rs2097494	0.95[ASN][1000 genomes]
rs2227188	0.87[ASN][1000 genomes]
rs2472550	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs2639619	0.86[EUR][1000 genomes]
rs2639620	0.86[EUR][1000 genomes]
rs2859224	0.86[EUR][1000 genomes]
rs2859225	0.86[EUR][1000 genomes]
rs2859226	0.86[EUR][1000 genomes]
rs2859228	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs3752515	0.81[CHB][hapmap]
rs3768444	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs4433434	0.95[ASN][1000 genomes]
rs6424973	0.86[CHB][hapmap];0.83[ASN][1000 genomes]
rs6425007	0.95[ASN][1000 genomes]
rs6656713	0.95[ASN][1000 genomes]
rs6686080	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs6686157	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs7525372	0.95[ASN][1000 genomes]
rs7531652	0.86[CHB][hapmap]
rs7539231	0.85[ASN][1000 genomes]
rs763108	0.95[ASN][1000 genomes]
rs9425646	0.86[CHB][hapmap];0.87[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1894626	SUCO	cis	Muscle Skeletal	GTEx

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172603400-172608200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:172605200-172608000	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr1:172605600-172608400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr1:172605800-172608000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr1:172605800-172610400	Enhancers	Placenta Amnion	Placenta Amnion
6	chr1:172606000-172608000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr1:172606000-172608400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr1:172606200-172608200	Enhancers	HMEC	breast
9	chr1:172606400-172608000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr1:172606400-172608000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr1:172606400-172608200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:172606400-172608400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:172606600-172608000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
14	chr1:172606600-172608000	Enhancers	Rectal Mucosa Donor 29	rectum
15	chr1:172606600-172608000	Flanking Active TSS	NHEK	skin
16	chr1:172606600-172608400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr1:172606600-172608400	Enhancers	HSMM	muscle
18	chr1:172606600-172609600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr1:172606600-172609600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr1:172606600-172609600	Enhancers	NHLF	lung
21	chr1:172606600-172609800	Enhancers	Fetal Thymus	thymus
22	chr1:172606600-172609800	Enhancers	NHDF-Ad	bronchial
23	chr1:172606600-172610400	Enhancers	K562	blood
24	chr1:172606600-172610800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr1:172606600-172610800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr1:172606800-172608600	Weak transcription	Left Ventricle	heart
27	chr1:172606800-172609000	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr1:172606800-172610000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
29	chr1:172607000-172608800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
30	chr1:172607000-172609000	Enhancers	Thymus	Thymus
31	chr1:172607000-172609600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr1:172607000-172612000	Weak transcription	Esophagus	oesophagus
33	chr1:172607200-172608000	Enhancers	GM12878-XiMat	blood
34	chr1:172607200-172608000	Flanking Active TSS	NH-A	brain
35	chr1:172607200-172608600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr1:172607200-172609000	Flanking Active TSS	Primary T cells from cord blood	blood
37	chr1:172607200-172609000	Enhancers	A549	lung
38	chr1:172607200-172609000	Flanking Active TSS	Osteobl	bone
39	chr1:172607400-172608000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
40	chr1:172607400-172608200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr1:172607400-172608200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
42	chr1:172607400-172608400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr1:172607400-172608800	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr1:172607400-172609000	Flanking Active TSS	Dnd41	blood
45	chr1:172607400-172609600	Enhancers	HSMMtube	muscle
46	chr1:172607600-172608400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr1:172607600-172608400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
48	chr1:172607600-172608600	Enhancers	HUVEC	blood vessel
49	chr1:172607600-172608800	Enhancers	HUES6 Cell Line	embryonic stem cell
50	chr1:172607600-172609000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood

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