Variant report

Variant	rs9425646
Chromosome Location	chr1:172585656-172585657
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr1:172585264-172585718	HL-60	blood:	n/a	n/a
2	SPI1	chr1:172585284-172586138	HL-60	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172567348..172569874-chr1:172585238..172587160,2	K562	blood:

Variant related genes	Relation type
RNU6-693P	TF binding region

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10157500	0.86[ASN][1000 genomes]
rs10157519	1.00[JPT][hapmap]
rs10752994	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10798040	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10912058	0.98[ASN][1000 genomes]
rs10912080	0.92[ASN][1000 genomes]
rs10912083	0.91[ASN][1000 genomes]
rs10912084	0.91[ASN][1000 genomes]
rs11805370	0.88[ASN][1000 genomes]
rs12087284	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12121051	0.92[ASN][1000 genomes]
rs12146100	0.89[ASN][1000 genomes]
rs1894625	0.96[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs1894626	0.86[CHB][hapmap];0.87[ASN][1000 genomes]
rs2097492	0.89[ASN][1000 genomes]
rs2097493	0.88[ASN][1000 genomes]
rs2097494	0.92[ASN][1000 genomes]
rs2157420	0.87[ASN][1000 genomes]
rs2213712	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2227188	1.00[ASN][1000 genomes]
rs2285144	0.82[ASN][1000 genomes]
rs2472550	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2472552	0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs3752515	0.95[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs3768444	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4433434	0.92[ASN][1000 genomes]
rs6424973	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6425007	0.92[ASN][1000 genomes]
rs6656713	0.92[ASN][1000 genomes]
rs6686080	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6686157	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6695152	0.86[ASN][1000 genomes]
rs7525372	0.92[ASN][1000 genomes]
rs7531652	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7539231	0.96[ASN][1000 genomes]
rs7539443	0.82[ASN][1000 genomes]
rs763108	0.92[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9425646	SUCO	cis	Muscle Skeletal	GTEx

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172566600-172595800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr1:172579800-172588600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr1:172580200-172589800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr1:172580800-172588800	Weak transcription	NH-A	brain
5	chr1:172581000-172585800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr1:172581000-172586400	Weak transcription	Primary T cells from cord blood	blood
7	chr1:172581000-172589400	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr1:172582000-172588600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr1:172584600-172586800	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr1:172585200-172585800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
11	chr1:172585200-172586400	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr1:172585400-172585800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr1:172585400-172586000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr1:172585400-172586000	Enhancers	Placenta	Placenta
15	chr1:172585600-172585800	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr1:172585600-172586000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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