Variant report

Variant	rs2157420
Chromosome Location	chr1:172566027-172566028
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10157500	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10752994	0.87[ASN][1000 genomes]
rs10912058	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10912080	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10912083	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10912084	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11805370	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12087284	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12121051	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12146100	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1894625	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2097492	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2097493	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2097494	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2227188	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2285144	0.81[AMR][1000 genomes]
rs2472550	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2472552	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3752515	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3768444	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4433434	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6424973	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6425007	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6656713	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6686080	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6686157	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6695152	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7525372	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7539231	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7539443	0.81[AMR][1000 genomes]
rs763108	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9425646	0.87[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2157420	SUCO	cis	Muscle Skeletal	GTEx

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172519400-172571600	Weak transcription	Brain Angular Gyrus	brain
2	chr1:172535600-172569200	Weak transcription	Gastric	stomach
3	chr1:172540200-172581000	Weak transcription	Colonic Mucosa	Colon
4	chr1:172557400-172581200	Weak transcription	Fetal Heart	heart
5	chr1:172557600-172574600	Weak transcription	Stomach Mucosa	stomach
6	chr1:172559000-172583400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr1:172559400-172571600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr1:172559800-172573400	Weak transcription	Fetal Brain Male	brain
9	chr1:172560000-172566200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:172560000-172566800	Weak transcription	NHLF	lung
11	chr1:172560000-172569600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr1:172560000-172578400	Weak transcription	HSMMtube	muscle
13	chr1:172560000-172580600	Weak transcription	Small Intestine	intestine
14	chr1:172560000-172581200	Weak transcription	Psoas Muscle	Psoas
15	chr1:172560000-172582400	Weak transcription	Brain Substantia Nigra	brain
16	chr1:172560200-172566200	Weak transcription	Colon Smooth Muscle	Colon
17	chr1:172560200-172566600	Weak transcription	K562	blood
18	chr1:172560200-172567200	Weak transcription	HepG2	liver
19	chr1:172560200-172569200	Weak transcription	Osteobl	bone
20	chr1:172560200-172569400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr1:172560200-172574200	Weak transcription	HUVEC	blood vessel
22	chr1:172560200-172581800	Weak transcription	Hela-S3	cervix
23	chr1:172560400-172566200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr1:172560400-172566200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr1:172560400-172566200	Weak transcription	A549	lung
26	chr1:172560400-172566400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr1:172560400-172566400	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr1:172560400-172566600	Weak transcription	HSMM	muscle
29	chr1:172560400-172566600	Weak transcription	NH-A	brain
30	chr1:172560400-172566600	Weak transcription	NHDF-Ad	bronchial
31	chr1:172560400-172568600	Weak transcription	NHEK	skin
32	chr1:172560400-172569200	Weak transcription	GM12878-XiMat	blood
33	chr1:172560400-172569600	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr1:172560400-172569600	Weak transcription	HMEC	breast
35	chr1:172560400-172571400	Weak transcription	Brain Cingulate Gyrus	brain
36	chr1:172560400-172572800	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr1:172560600-172566200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr1:172560600-172569200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr1:172563600-172566600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr1:172563600-172567000	Strong transcription	Fetal Muscle Leg	muscle
41	chr1:172563600-172567600	Strong transcription	Primary T cells from cord blood	blood
42	chr1:172563600-172568800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr1:172563600-172574400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr1:172563600-172574800	Strong transcription	Primary B cells from peripheral blood	blood
45	chr1:172563800-172566200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr1:172563800-172566400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
47	chr1:172563800-172567000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr1:172563800-172567800	Strong transcription	Rectal Mucosa Donor 29	rectum
49	chr1:172563800-172568000	Strong transcription	Liver	Liver
50	chr1:172563800-172581200	Strong transcription	Primary B cells from cord blood	blood

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