Variant report

Variant	rs6656713
Chromosome Location	chr1:172605652-172605653
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:172605365..172608863-chr1:172611865..172614663,3	K562	blood:
2	chr1:172597199..172599054-chr1:172604096..172606336,2	MCF-7	breast:
3	chr1:172600388..172603451-chr1:172605464..172607588,3	MCF-7	breast:
4	chr1:172604637..172606919-chr1:172618615..172620134,2	K562	blood:
5	chr1:172595240..172596815-chr1:172605161..172606970,2	K562	blood:
6	chr1:172603799..172606030-chr1:172606827..172609383,2	MCF-7	breast:
7	chr1:172605365..172608038-chr1:172613120..172614663,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10157500	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10752994	0.91[ASN][1000 genomes]
rs10911856	0.81[AMR][1000 genomes]
rs10912058	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10912080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10912083	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10912084	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11805370	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12087284	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12121051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12146100	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1894625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1894626	0.95[ASN][1000 genomes]
rs2097492	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2097493	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2097494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2157420	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2227188	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2285144	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2422144	0.81[AMR][1000 genomes]
rs2472550	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2472552	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2639621	0.89[EUR][1000 genomes]
rs3752515	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3768444	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4433434	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6424973	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6425007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6686080	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6686157	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6695152	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7525372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7539231	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7539443	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs763108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9425646	0.92[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6656713	SUCO	cis	Muscle Skeletal	GTEx

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172597200-172605800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:172598800-172605800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr1:172600400-172605800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr1:172600400-172606400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:172600400-172606400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr1:172601400-172606600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:172601600-172606000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr1:172603400-172608200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr1:172603600-172606800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr1:172603800-172606600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr1:172605200-172608000	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr1:172605400-172606800	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr1:172605400-172607800	Enhancers	Primary T cells fromperipheralblood	blood
14	chr1:172605600-172606800	ZNF genes & repeats	Osteobl	bone
15	chr1:172605600-172607200	Enhancers	Primary T cells from cord blood	blood
16	chr1:172605600-172607200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr1:172605600-172607800	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr1:172605600-172608400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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