Variant report

Variant	rs4433434
Chromosome Location	chr1:172603769-172603770
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10157500	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10752994	0.91[CHB][hapmap];0.91[ASN][1000 genomes]
rs10911856	0.80[AMR][1000 genomes]
rs10912058	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10912080	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10912083	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10912084	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11805370	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12087284	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12121051	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12146100	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1894625	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.82[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1894626	0.85[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs2097492	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2097493	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2097494	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2157420	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2227188	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2285144	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2422144	0.80[AMR][1000 genomes]
rs2472550	1.00[CEU][hapmap];0.91[CHB][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2472552	1.00[CEU][hapmap];0.81[CHB][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2639621	0.89[EUR][1000 genomes]
rs3752515	1.00[CEU][hapmap];0.85[CHB][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3768444	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6424973	1.00[CEU][hapmap];0.91[CHB][hapmap];0.80[YRI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6425007	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6656713	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6686080	1.00[CEU][hapmap];0.91[CHB][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6686157	1.00[CEU][hapmap];0.91[CHB][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6695152	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7525372	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7531652	0.91[CHB][hapmap]
rs7539231	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7539443	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs763108	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9425646	0.91[CHB][hapmap];0.92[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4433434	SUCO	cis	Muscle Skeletal	GTEx

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172597200-172605800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:172597600-172605200	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr1:172598200-172605400	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr1:172598800-172605800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr1:172599000-172605600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr1:172600200-172605600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr1:172600400-172605600	Weak transcription	Osteobl	bone
8	chr1:172600400-172605800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr1:172600400-172606400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:172600400-172606400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr1:172600600-172605400	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr1:172600600-172605600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr1:172601400-172606600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr1:172601600-172606000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr1:172602800-172603800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:172603400-172608200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr1:172603600-172606800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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