Variant report

Variant	rs10798040
Chromosome Location	chr1:172492498-172492499
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172483753..172487380-chr1:172490870..172493314,3	MCF-7	breast:
2	chr1:172492296..172496471-chr1:172500271..172503855,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000094975	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10157500	0.91[ASN][1000 genomes]
rs10157519	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10218613	0.93[ASN][1000 genomes]
rs10489280	0.93[ASN][1000 genomes]
rs10752994	0.82[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs10911856	0.99[ASN][1000 genomes]
rs12087284	0.86[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1894625	0.82[JPT][hapmap]
rs1894626	0.92[CEU][hapmap]
rs2097498	0.96[ASN][1000 genomes]
rs2285144	0.97[ASN][1000 genomes]
rs2422144	0.99[ASN][1000 genomes]
rs2472550	0.82[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2472552	0.82[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs2859228	0.84[CEU][hapmap]
rs3752515	0.87[CHB][hapmap];0.91[CHD][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs3768444	0.82[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4145436	0.91[ASN][1000 genomes]
rs5014539	0.99[ASN][1000 genomes]
rs6424973	0.82[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6686080	0.82[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6686157	0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6695152	0.92[ASN][1000 genomes]
rs7531652	0.82[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap]
rs7539443	0.97[ASN][1000 genomes]
rs9425646	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs9943276	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172487800-172499000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr1:172492000-172492800	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr1:172492200-172492600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:172492200-172492600	Enhancers	H9 Cell Line	embryonic stem cell
5	chr1:172492200-172492600	Enhancers	K562	blood

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