Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10488303	0.90[CHB][hapmap]
rs11716588	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11718584	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11923277	0.90[CHB][hapmap]
rs16829203	0.90[CHB][hapmap];1.00[CHD][hapmap]
rs16829250	0.84[CHD][hapmap];0.86[MEX][hapmap]
rs17465252	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17465281	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17491031	0.90[CHB][hapmap];1.00[CHD][hapmap];0.83[ASN][1000 genomes]
rs28454078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2866316	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35625542	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs41330049	0.81[CHB][hapmap];0.92[CHD][hapmap]
rs41414745	0.81[CHB][hapmap];1.00[CHD][hapmap]
rs41523948	0.81[CHB][hapmap];1.00[CHD][hapmap]
rs55797028	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6795523	0.81[CHB][hapmap];1.00[CHD][hapmap]
rs7625631	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7625642	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7651128	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9817851	0.90[CHB][hapmap]
rs9836742	0.90[CHB][hapmap]
rs9860173	0.81[CHB][hapmap]
rs9861721	0.81[CHB][hapmap];1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118597400-118599400	Enhancers	Fetal Heart	heart
2	chr3:118598200-118598800	Enhancers	Left Ventricle	heart

Quick Search: