Variant report

Variant	rs4151479
Chromosome Location	chr13:48934934-48934935
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:48932077..48935035-chr3:64226427..64228435,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1002865	0.81[AFR][1000 genomes]
rs12583514	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12583617	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12583644	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12585384	1.00[EUR][1000 genomes]
rs12585742	1.00[EUR][1000 genomes]
rs12857866	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs1926597	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2148515	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3092865	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34802393	1.00[ASN][1000 genomes]
rs4151472	1.00[EUR][1000 genomes]
rs4151522	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4151524	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4151598	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs4151602	1.00[EUR][1000 genomes]
rs4151613	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs449268	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs55686933	1.00[EUR][1000 genomes]
rs57394470	1.00[EUR][1000 genomes]
rs6650379	1.00[EUR][1000 genomes]
rs7326934	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs73479216	1.00[EUR][1000 genomes]
rs73479220	1.00[EUR][1000 genomes]
rs73485077	0.81[AFR][1000 genomes]
rs73495018	1.00[EUR][1000 genomes]
rs73495037	1.00[EUR][1000 genomes]
rs74074915	1.00[EUR][1000 genomes]
rs74074916	1.00[EUR][1000 genomes]
rs74074942	1.00[EUR][1000 genomes]
rs74074944	1.00[EUR][1000 genomes]
rs74074946	1.00[EUR][1000 genomes]
rs74074951	1.00[EUR][1000 genomes]
rs74075993	0.94[AFR][1000 genomes]
rs74077638	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8002352	0.81[AFR][1000 genomes]
rs8002765	0.81[AFR][1000 genomes]
rs9316386	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9316387	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9316396	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9331984	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs9331994	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs9332033	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs9332044	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs9332055	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9332070	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs9332085	1.00[EUR][1000 genomes]
rs9332246	0.92[YRI][hapmap]
rs9332287	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9332304	0.81[AFR][1000 genomes]
rs9595914	1.00[CHB][hapmap]

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48908400-48944800	Weak transcription	Small Intestine	intestine
2	chr13:48909000-48972200	Weak transcription	NHEK	skin
3	chr13:48911800-48948400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr13:48912200-48968200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr13:48913400-48944200	Weak transcription	Aorta	Aorta
6	chr13:48914000-48944400	Weak transcription	Fetal Stomach	stomach
7	chr13:48914000-48965800	Weak transcription	Lung	lung
8	chr13:48914800-48972000	Weak transcription	NHLF	lung
9	chr13:48916200-48947400	Weak transcription	Fetal Brain Male	brain
10	chr13:48916400-48948400	Weak transcription	NH-A	brain
11	chr13:48916800-48985400	Weak transcription	Colonic Mucosa	Colon
12	chr13:48917800-48944400	Weak transcription	HepG2	liver
13	chr13:48918000-48954400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr13:48918200-48937200	Weak transcription	Placenta	Placenta
15	chr13:48918600-48967200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr13:48920200-48974400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr13:48921600-48972000	Weak transcription	Stomach Mucosa	stomach
18	chr13:48925000-48944200	Weak transcription	HSMMtube	muscle
19	chr13:48925000-48962800	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr13:48925200-48947400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr13:48925200-48949000	Weak transcription	Fetal Kidney	kidney
22	chr13:48925200-48974800	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr13:48925400-48939600	Weak transcription	Osteobl	bone
24	chr13:48925400-48948200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr13:48925400-48976400	Weak transcription	Ovary	ovary
26	chr13:48925600-48968000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr13:48925800-48943600	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr13:48926200-48949200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr13:48926200-48954600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr13:48926400-48943400	Weak transcription	Left Ventricle	heart
31	chr13:48926800-48972000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr13:48928000-48948000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr13:48928200-48937200	Weak transcription	Liver	Liver
34	chr13:48928200-48948400	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr13:48928200-48948400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr13:48928200-48954400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr13:48928200-48954600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr13:48928200-48971800	Weak transcription	A549	lung
39	chr13:48928400-48936800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr13:48928400-48937200	Weak transcription	Primary T cells from cord blood	blood
41	chr13:48928400-48941400	Weak transcription	HUVEC	blood vessel
42	chr13:48928400-48943600	Weak transcription	Adipose Nuclei	Adipose
43	chr13:48928400-48944400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr13:48928400-48952800	Weak transcription	Fetal Heart	heart
45	chr13:48928400-48963800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr13:48928600-48943400	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr13:48928800-48936800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr13:48929000-48943400	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr13:48929200-48936600	Weak transcription	HSMM	muscle
50	chr13:48929200-48944400	Weak transcription	Psoas Muscle	Psoas

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