Variant report

Variant	rs3092865
Chromosome Location	chr13:48881617-48881618
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:48880616..48882681-chr13:48883191..48885287,2	MCF-7	breast:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs12583514	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17069281	1.00[EUR][1000 genomes]
rs17071534	1.00[ASN][1000 genomes]
rs17071548	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17071560	1.00[EUR][1000 genomes]
rs17071673	1.00[EUR][1000 genomes]
rs17071675	1.00[EUR][1000 genomes]
rs17071714	1.00[EUR][1000 genomes]
rs17071716	1.00[EUR][1000 genomes]
rs3092883	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3092888	0.86[YRI][hapmap]
rs34802393	0.87[AMR][1000 genomes]
rs41425345	1.00[EUR][1000 genomes]
rs4151452	0.86[YRI][hapmap]
rs4151460	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151468	1.00[EUR][1000 genomes]
rs4151479	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4151487	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151514	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151516	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151522	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4151524	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4151527	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151563	1.00[EUR][1000 genomes]
rs4151587	1.00[EUR][1000 genomes]
rs4151598	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4151613	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4151621	1.00[EUR][1000 genomes]
rs4151628	1.00[EUR][1000 genomes]
rs449268	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs55830747	1.00[ASN][1000 genomes]
rs56029999	1.00[ASN][1000 genomes]
rs561475	1.00[JPT][hapmap]
rs56945534	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57935201	1.00[ASN][1000 genomes]
rs59550884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs645833	1.00[JPT][hapmap]
rs7316991	1.00[EUR][1000 genomes]
rs7323517	1.00[EUR][1000 genomes]
rs7324752	1.00[EUR][1000 genomes]
rs7326934	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7329733	1.00[EUR][1000 genomes]
rs7337056	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73487075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73487091	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73490880	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74074170	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74074183	1.00[ASN][1000 genomes]
rs74074184	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74074189	1.00[ASN][1000 genomes]
rs7981750	1.00[EUR][1000 genomes]
rs7984036	1.00[EUR][1000 genomes]
rs7984309	1.00[EUR][1000 genomes]
rs7997794	1.00[EUR][1000 genomes]
rs9316386	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9331954	1.00[EUR][1000 genomes]
rs9332019	1.00[EUR][1000 genomes]
rs9332033	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9332044	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9332048	1.00[EUR][1000 genomes]
rs9332055	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9332070	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9332086	1.00[EUR][1000 genomes]
rs9332251	1.00[EUR][1000 genomes]
rs9332256	1.00[EUR][1000 genomes]
rs9332287	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9332296	1.00[EUR][1000 genomes]
rs9332298	1.00[EUR][1000 genomes]
rs943282	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3518074	chr13:48881552-48882672	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv3518085	chr13:48881552-48882672	Strong transcription Weak transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48878800-48890800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:48879000-48882600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr13:48879000-48891000	Weak transcription	Esophagus	oesophagus
4	chr13:48879400-48883600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr13:48879400-48890000	Weak transcription	Fetal Brain Male	brain
6	chr13:48879400-48890000	Weak transcription	Fetal Intestine Large	intestine
7	chr13:48879400-48894200	Weak transcription	A549	lung
8	chr13:48879600-48884800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr13:48879600-48889400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr13:48879800-48892400	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr13:48880000-48886000	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr13:48880000-48888000	Weak transcription	K562	blood
13	chr13:48880000-48889400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr13:48880000-48892000	Weak transcription	HSMMtube	muscle
15	chr13:48880200-48882800	Strong transcription	Fetal Intestine Small	intestine
16	chr13:48880200-48886800	Weak transcription	Fetal Heart	heart
17	chr13:48880200-48888000	Weak transcription	Fetal Lung	lung
18	chr13:48880200-48889200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr13:48880200-48890600	Weak transcription	NHLF	lung
20	chr13:48880200-48891400	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr13:48880200-48892200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr13:48880200-48892200	Weak transcription	Fetal Kidney	kidney
23	chr13:48880200-48892200	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr13:48880200-48892600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr13:48880200-48892600	Weak transcription	NH-A	brain
26	chr13:48880200-48893800	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr13:48880200-48894400	Weak transcription	Brain Anterior Caudate	brain
28	chr13:48880200-48913200	Weak transcription	Aorta	Aorta
29	chr13:48880400-48881800	Weak transcription	Liver	Liver
30	chr13:48880400-48889600	Weak transcription	Fetal Brain Female	brain
31	chr13:48880400-48890200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr13:48880400-48890400	Weak transcription	Gastric	stomach
33	chr13:48880400-48890400	Weak transcription	Lung	lung
34	chr13:48880400-48890800	Weak transcription	Duodenum Mucosa	Duodenum
35	chr13:48880400-48891000	Weak transcription	Fetal Muscle Trunk	muscle
36	chr13:48880400-48891200	Weak transcription	Placenta	Placenta
37	chr13:48880400-48892400	Weak transcription	HMEC	breast
38	chr13:48880400-48892600	Weak transcription	Primary hematopoietic stem cells	blood
39	chr13:48880600-48881800	Weak transcription	Fetal Muscle Leg	muscle
40	chr13:48880600-48882000	Weak transcription	Osteobl	bone
41	chr13:48880600-48882200	Weak transcription	Adipose Nuclei	Adipose
42	chr13:48880600-48882600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr13:48880600-48882600	Weak transcription	Right Atrium	heart
44	chr13:48880600-48884000	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr13:48880600-48884000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr13:48880600-48884400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr13:48880600-48890200	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr13:48880600-48890200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr13:48880600-48890400	Weak transcription	Left Ventricle	heart
50	chr13:48880600-48890400	Weak transcription	Right Ventricle	heart

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