Variant report

Variant	rs9332256
Chromosome Location	chr13:48812341-48812342
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:48811286..48815057-chr13:48876543..48879640,3	MCF-7	breast:
2	chr13:48808662..48812732-chr13:48820679..48824988,4	K562	blood:
3	chr13:48803757..48809033-chr13:48809443..48816513,10	MCF-7	breast:
4	chr13:48811595..48813278-chr13:48821384..48823483,3	K562	blood:

Variant related genes	Relation type
ENSG00000139687	Chromatin interaction
ENSG00000231473	Chromatin interaction
ENSG00000136156	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs17071548	1.00[EUR][1000 genomes]
rs17071560	1.00[EUR][1000 genomes]
rs17071673	1.00[EUR][1000 genomes]
rs17071675	1.00[EUR][1000 genomes]
rs17071714	1.00[EUR][1000 genomes]
rs17071716	1.00[EUR][1000 genomes]
rs3092865	1.00[EUR][1000 genomes]
rs3092883	1.00[EUR][1000 genomes]
rs41425345	1.00[EUR][1000 genomes]
rs4151460	1.00[EUR][1000 genomes]
rs4151468	1.00[EUR][1000 genomes]
rs4151487	1.00[EUR][1000 genomes]
rs4151514	1.00[EUR][1000 genomes]
rs4151516	1.00[EUR][1000 genomes]
rs4151527	1.00[EUR][1000 genomes]
rs4151563	1.00[EUR][1000 genomes]
rs4151587	1.00[EUR][1000 genomes]
rs56945534	1.00[EUR][1000 genomes]
rs59550884	1.00[EUR][1000 genomes]
rs61752712	1.00[EUR][1000 genomes]
rs7329733	1.00[EUR][1000 genomes]
rs7337056	1.00[EUR][1000 genomes]
rs73485054	0.81[AFR][1000 genomes]
rs73485057	0.85[AFR][1000 genomes]
rs73487075	1.00[EUR][1000 genomes]
rs73487091	1.00[EUR][1000 genomes]
rs73490880	1.00[EUR][1000 genomes]
rs74074170	1.00[EUR][1000 genomes]
rs74074184	1.00[EUR][1000 genomes]
rs7984036	1.00[EUR][1000 genomes]
rs7997794	1.00[EUR][1000 genomes]
rs9332251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332287	1.00[EUR][1000 genomes]
rs9332296	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9332298	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv541766	chr13:48703229-48857639	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48808400-48815200	Weak transcription	Esophagus	oesophagus
2	chr13:48808400-48829000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr13:48808400-48829200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr13:48808400-48843600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:48809200-48812400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
6	chr13:48809600-48837400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr13:48809800-48812400	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
8	chr13:48809800-48812600	Flanking Active TSS	NHEK	skin
9	chr13:48809800-48829200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr13:48810000-48813400	Weak transcription	Lung	lung
11	chr13:48810000-48813400	Weak transcription	Pancreas	Pancrea
12	chr13:48810000-48813600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr13:48810200-48812400	Enhancers	NH-A	brain
14	chr13:48810200-48813400	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr13:48810200-48814200	Enhancers	HepG2	liver
16	chr13:48810200-48816400	Weak transcription	Stomach Mucosa	stomach
17	chr13:48810400-48812400	Enhancers	Muscle Satellite Cultured Cells	--
18	chr13:48810400-48812400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr13:48810400-48812400	Enhancers	Fetal Heart	heart
20	chr13:48810400-48830200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr13:48810800-48841000	Weak transcription	Hela-S3	cervix
22	chr13:48811000-48812400	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr13:48811000-48813200	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr13:48811200-48819200	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
25	chr13:48811200-48843800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr13:48811400-48812400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr13:48811400-48813400	Weak transcription	Fetal Stomach	stomach
28	chr13:48811400-48813600	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr13:48811400-48828200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr13:48811600-48812400	Enhancers	Primary T helper cells fromperipheralblood	blood
31	chr13:48811600-48812400	Enhancers	Fetal Lung	lung
32	chr13:48811600-48812600	Enhancers	Primary T helper naive cells from peripheral blood	blood
33	chr13:48811600-48812600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr13:48811600-48812600	Enhancers	Osteobl	bone
35	chr13:48811600-48813000	Weak transcription	HSMM	muscle
36	chr13:48811600-48813200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
37	chr13:48811600-48813200	Weak transcription	Fetal Thymus	thymus
38	chr13:48811600-48813200	Weak transcription	Small Intestine	intestine
39	chr13:48811600-48813400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr13:48811600-48813400	Weak transcription	Primary B cells from peripheral blood	blood
41	chr13:48811600-48813400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr13:48811600-48813400	Weak transcription	Fetal Intestine Large	intestine
43	chr13:48811600-48813400	Weak transcription	Fetal Intestine Small	intestine
44	chr13:48811600-48813400	Weak transcription	Fetal Muscle Leg	muscle
45	chr13:48811600-48813400	Weak transcription	Placenta	Placenta
46	chr13:48811600-48813400	Weak transcription	Left Ventricle	heart
47	chr13:48811600-48813400	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr13:48811600-48813600	Genic enhancers	Dnd41	blood
49	chr13:48811600-48815200	Weak transcription	Right Ventricle	heart
50	chr13:48811600-48819800	Weak transcription	Spleen	Spleen

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