The 2.0 version of rSNPBase

Variant report

Variant rs56945534
Chromosome Location chr13:48848557-48848558
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:48833800-48851600 Weak transcription Fetal Heart heart
2 chr13:48835800-48849400 Weak transcription NHLF lung
3 chr13:48837800-48848600 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
4 chr13:48837800-48848600 Weak transcription Fetal Brain Female brain
5 chr13:48837800-48853000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
6 chr13:48837800-48856400 Weak transcription Colon Smooth Muscle Colon
7 chr13:48838000-48849600 Weak transcription Right Ventricle heart
8 chr13:48838000-48850000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
9 chr13:48838000-48850000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
10 chr13:48838000-48852800 Weak transcription HUVEC blood vessel
11 chr13:48838200-48849600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
12 chr13:48839800-48848600 Weak transcription Rectal Smooth Muscle rectum
13 chr13:48839800-48850200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
14 chr13:48840000-48851600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
15 chr13:48841800-48852000 Weak transcription Pancreatic Islets Pancreatic Islet
16 chr13:48841800-48853200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
17 chr13:48843800-48849800 Weak transcription Sigmoid Colon Sigmoid Colon
18 chr13:48843800-48850400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
19 chr13:48844000-48849800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
20 chr13:48844000-48850600 Weak transcription Primary hematopoietic stem cells blood
21 chr13:48844200-48850000 Weak transcription HSMM muscle
22 chr13:48844200-48850600 Weak transcription Fetal Muscle Trunk muscle
23 chr13:48844200-48853000 Weak transcription Brain Inferior Temporal Lobe brain
24 chr13:48844400-48849600 Weak transcription Skeletal Muscle Male skeletal muscle
25 chr13:48844400-48849800 Weak transcription Primary neutrophils fromperipheralblood blood
26 chr13:48844400-48849800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
27 chr13:48844400-48850000 Weak transcription Left Ventricle heart
28 chr13:48844400-48850200 Weak transcription Fetal Stomach stomach
29 chr13:48844400-48850200 Weak transcription Ovary ovary
30 chr13:48844400-48851400 Weak transcription Skeletal Muscle Female skeletal muscle
31 chr13:48844400-48851600 Weak transcription Fetal Adrenal Gland Adrenal Gland
32 chr13:48844400-48853000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
33 chr13:48844400-48853000 Weak transcription Brain Anterior Caudate brain
34 chr13:48844400-48853000 Weak transcription Fetal Muscle Leg muscle
35 chr13:48844400-48857600 Weak transcription HSMMtube muscle
36 chr13:48844400-48877200 Weak transcription Aorta Aorta
37 chr13:48844600-48849800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
38 chr13:48844600-48849800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
39 chr13:48844800-48849800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
40 chr13:48845000-48849200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
41 chr13:48845200-48850400 Weak transcription Fetal Thymus thymus
42 chr13:48846200-48851200 Weak transcription Breast Myoepithelial Primary Cells Breast
43 chr13:48847800-48853000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
44 chr13:48848000-48849600 Weak transcription Brain Angular Gyrus brain
45 chr13:48848000-48853000 Weak transcription Brain Cingulate Gyrus brain
46 chr13:48848000-48853000 Weak transcription Brain Hippocampus Middle brain
47 chr13:48848000-48853000 Weak transcription Brain Substantia Nigra brain

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Last update: Aug 31, 2015