Variant report

Variant	rs4235948
Chromosome Location	chr6:164179231-164179232
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10945917	0.95[ASN][1000 genomes]
rs1465134	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1885957	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1885958	0.95[ASN][1000 genomes]
rs2209028	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4055433	0.85[ASN][1000 genomes]
rs4709009	0.95[ASN][1000 genomes]
rs4709010	0.95[ASN][1000 genomes]
rs4709012	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4709754	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6455916	0.95[ASN][1000 genomes]
rs7741441	0.95[ASN][1000 genomes]
rs7766449	0.95[ASN][1000 genomes]
rs9295229	0.90[ASN][1000 genomes]
rs9347782	0.95[ASN][1000 genomes]
rs9365603	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv520292	chr6:164174617-164190919	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164172200-164185800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:164172400-164180400	Weak transcription	K562	blood
3	chr6:164175000-164179600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr6:164177600-164182200	Weak transcription	HSMM	muscle
5	chr6:164178400-164179400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr6:164178600-164179400	Enhancers	H1 Cell Line	embryonic stem cell
7	chr6:164178600-164182000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr6:164178600-164185600	Weak transcription	Left Ventricle	heart
9	chr6:164178800-164182000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:164178800-164185400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr6:164179000-164180000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr6:164179000-164180400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:164179000-164185400	Weak transcription	Fetal Muscle Leg	muscle
14	chr6:164179000-164186000	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr6:164179200-164180400	Weak transcription	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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