Variant report

Variant	rs4709754
Chromosome Location	chr6:164173242-164173243
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10945917	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1465134	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1885957	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1885958	0.95[ASN][1000 genomes]
rs2209028	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4055433	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4235948	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4709006	0.84[AMR][1000 genomes]
rs4709007	0.82[AMR][1000 genomes]
rs4709009	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4709010	0.95[ASN][1000 genomes]
rs4709012	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6455915	0.82[AMR][1000 genomes]
rs6455916	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6931768	0.84[AMR][1000 genomes]
rs7741441	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7742234	0.84[AMR][1000 genomes]
rs7765631	0.84[AMR][1000 genomes]
rs7766259	0.82[AMR][1000 genomes]
rs7766449	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9295229	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9347782	0.95[ASN][1000 genomes]
rs9364700	0.84[AMR][1000 genomes]
rs9365603	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9458892	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164163200-164178400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:164166800-164173600	Enhancers	Fetal Heart	heart
3	chr6:164167800-164177200	Weak transcription	HSMM	muscle
4	chr6:164171600-164173600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
5	chr6:164171800-164174800	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:164171800-164174800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr6:164171800-164176600	Weak transcription	Primary T cells from cord blood	blood
8	chr6:164172200-164185800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:164172400-164173400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr6:164172400-164175000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:164172400-164176200	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr6:164172400-164180400	Weak transcription	K562	blood
13	chr6:164172600-164173400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr6:164172600-164178400	Weak transcription	Right Atrium	heart
15	chr6:164172800-164174800	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr6:164172800-164176200	Weak transcription	Primary B cells from cord blood	blood
17	chr6:164173200-164173400	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr6:164173200-164173400	Enhancers	Fetal Muscle Leg	muscle
19	chr6:164173200-164173800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr6:164173200-164174200	Weak transcription	Fetal Muscle Trunk	muscle

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