Variant report

Variant	rs4709010
Chromosome Location	chr6:164168200-164168201
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:164167299..164170044-chr6:164171641..164173179,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10945917	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1465134	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1885957	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1885958	1.00[ASN][1000 genomes]
rs2209028	0.95[ASN][1000 genomes]
rs4235948	0.95[ASN][1000 genomes]
rs4709006	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4709007	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4709008	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4709009	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4709012	0.95[ASN][1000 genomes]
rs4709748	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4709754	0.95[ASN][1000 genomes]
rs6455915	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6455916	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6931768	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7741441	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7742234	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7765631	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7766259	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7766449	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9295229	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9347782	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9364700	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9365603	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9458892	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1025171	chr6:164113981-164170027	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164163200-164178400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:164166200-164168600	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr6:164166400-164169000	Weak transcription	Right Ventricle	heart
4	chr6:164166400-164170200	Weak transcription	Fetal Brain Male	brain
5	chr6:164166800-164173600	Enhancers	Fetal Heart	heart
6	chr6:164167200-164168600	Weak transcription	Left Ventricle	heart
7	chr6:164167200-164169200	Weak transcription	Brain Germinal Matrix	brain
8	chr6:164167200-164169600	Weak transcription	Right Atrium	heart
9	chr6:164167400-164168600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr6:164167400-164169000	Weak transcription	Esophagus	oesophagus
11	chr6:164167400-164171600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:164167400-164171600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:164167400-164172000	Weak transcription	HSMMtube	muscle
14	chr6:164167600-164168600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr6:164167800-164169000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:164167800-164171400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:164167800-164171600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:164167800-164177200	Weak transcription	HSMM	muscle
19	chr6:164168000-164168400	Weak transcription	Fetal Muscle Leg	muscle
20	chr6:164168000-164168400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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