Variant report

Variant	rs426570
Chromosome Location	chr11:16907008-16907009
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11024074	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs367373	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs381815	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs388968	0.80[ASN][1000 genomes]
rs413858	0.82[ASN][1000 genomes]
rs416258	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs422272	0.82[ASN][1000 genomes]
rs434176	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs448671	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs58542530	0.80[ASN][1000 genomes]
rs61882035	0.80[ASN][1000 genomes]
rs61882036	0.80[ASN][1000 genomes]
rs61882037	0.80[ASN][1000 genomes]
rs7926335	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16898400-16908400	Weak transcription	HepG2	liver
2	chr11:16903200-16908800	Weak transcription	Fetal Intestine Small	intestine
3	chr11:16903600-16908800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr11:16903600-16914400	Weak transcription	Right Atrium	heart
5	chr11:16905200-16909000	Weak transcription	Esophagus	oesophagus
6	chr11:16905200-16909200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:16905200-16909200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:16905200-16913600	Weak transcription	Gastric	stomach
9	chr11:16905200-16913600	Weak transcription	Pancreas	Pancrea
10	chr11:16906600-16907600	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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