Variant report

Variant	rs4268380
Chromosome Location	chr1:197771731-197771732
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10754228	0.81[ASN][1000 genomes]
rs10922289	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10922291	0.98[ASN][1000 genomes]
rs12066841	0.84[ASN][1000 genomes]
rs12081207	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12564235	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4915561	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4915564	0.99[ASN][1000 genomes]
rs55995691	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6428416	0.82[ASN][1000 genomes]
rs6667560	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6675292	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7516334	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7516481	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7533766	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947369	chr1:197750549-197778118	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3371310	chr1:197771529-197775727	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197771200-197772000	Active TSS	H9 Cell Line	embryonic stem cell
2	chr1:197771200-197777000	Weak transcription	Gastric	stomach
3	chr1:197771200-197777800	Weak transcription	HepG2	liver
4	chr1:197771400-197771800	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr1:197771400-197771800	Active TSS	H1 Cell Line	embryonic stem cell
6	chr1:197771400-197772000	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr1:197771400-197772000	Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chr1:197771400-197772000	Weak transcription	Dnd41	blood
9	chr1:197771400-197772200	Active TSS	iPS-15b Cell Line	embryonic stem cell
10	chr1:197771600-197771800	Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr1:197771600-197772000	Active TSS	iPS-18 Cell Line	embryonic stem cell
12	chr1:197771600-197772000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr1:197771600-197780600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr1:197771600-197784000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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