Variant report

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10754228	0.95[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs10922289	0.98[ASN][1000 genomes]
rs10922291	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12066841	0.83[ASN][1000 genomes]
rs12081207	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.98[ASN][1000 genomes]
rs12564235	0.99[ASN][1000 genomes]
rs2111930	0.95[CHB][hapmap];0.89[CHD][hapmap];0.90[JPT][hapmap]
rs4268380	0.99[ASN][1000 genomes]
rs4915561	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.93[ASN][1000 genomes]
rs55995691	0.87[ASN][1000 genomes]
rs6428416	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6667560	0.90[CHB][hapmap];0.94[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs6675292	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.98[ASN][1000 genomes]
rs6691216	0.95[CHB][hapmap];0.86[CHD][hapmap];0.91[JPT][hapmap]
rs7516334	0.88[ASN][1000 genomes]
rs7516481	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.88[ASN][1000 genomes]
rs7533766	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947369	chr1:197750549-197778118	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3338319	chr1:197773129-197777427	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4915564	DENND1B	cis	parietal	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197771200-197777800	Weak transcription	HepG2	liver
2	chr1:197771600-197780600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:197771600-197784000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:197772000-197778000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr1:197775800-197777400	Enhancers	GM12878-XiMat	blood
6	chr1:197776200-197778800	Enhancers	Duodenum Mucosa	Duodenum
7	chr1:197776400-197777200	Enhancers	Rectal Mucosa Donor 29	rectum
8	chr1:197776400-197777200	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr1:197776400-197778400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr1:197776400-197780600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr1:197776400-197782600	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr1:197776600-197777200	Enhancers	K562	blood
13	chr1:197776600-197777400	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr1:197776600-197778600	Enhancers	Fetal Heart	heart
15	chr1:197776600-197785400	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr1:197776800-197778200	Enhancers	Stomach Mucosa	stomach
17	chr1:197776800-197782800	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr1:197777000-197777200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr1:197777000-197777400	Enhancers	Primary T cells fromperipheralblood	blood
20	chr1:197777000-197778200	Enhancers	Gastric	stomach
21	chr1:197777000-197778400	Enhancers	H1 Cell Line	embryonic stem cell

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