Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11639913	0.81[AMR][1000 genomes]
rs11862722	0.80[AMR][1000 genomes]
rs12051191	0.88[EUR][1000 genomes]
rs12149074	0.82[CHD][hapmap]
rs12597421	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12597942	0.86[EUR][1000 genomes]
rs12918435	0.80[AMR][1000 genomes]
rs28705163	0.82[AFR][1000 genomes]
rs4441287	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4461085	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4888065	0.94[EUR][1000 genomes]
rs4888066	0.84[CEU][hapmap];0.94[EUR][1000 genomes]
rs4889071	0.85[CEU][hapmap];0.81[GIH][hapmap];0.98[TSI][hapmap];0.94[EUR][1000 genomes]
rs4889072	0.85[CEU][hapmap];0.94[EUR][1000 genomes]
rs4889073	0.94[EUR][1000 genomes]
rs4889074	0.85[JPT][hapmap];0.81[AMR][1000 genomes]
rs4889075	0.90[JPT][hapmap];0.81[AMR][1000 genomes]
rs6564725	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7194550	0.96[EUR][1000 genomes]
rs7196219	0.94[EUR][1000 genomes]
rs8053986	0.88[AFR][1000 genomes]
rs9921252	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573294	chr16:80005642-80131944	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80081000-80092200	Weak transcription	Right Atrium	heart
2	chr16:80088400-80095000	Enhancers	Fetal Lung	lung
3	chr16:80088400-80095400	Enhancers	Fetal Stomach	stomach
4	chr16:80089000-80091000	Enhancers	Placenta Amnion	Placenta Amnion
5	chr16:80089200-80090600	Weak transcription	Fetal Brain Male	brain
6	chr16:80089200-80091000	Enhancers	Placenta	Placenta
7	chr16:80089200-80092600	Enhancers	Adipose Nuclei	Adipose
8	chr16:80089200-80094800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr16:80089400-80090800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr16:80089400-80091200	Enhancers	Ovary	ovary

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