Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr16:80072160-80072915	K562	blood:	n/a	n/a
2	FOS	chr16:80072198-80072826	MCF10A-Er-Src	breast:	n/a	chr16:80072642-80072651 chr16:80072643-80072654
3	FOS	chr16:80072175-80072824	MCF10A-Er-Src	breast:	n/a	chr16:80072642-80072651 chr16:80072643-80072654

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:80071404..80074131-chr16:80075886..80077558,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260237	TF binding region

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11639913	0.80[ASN][1000 genomes]
rs11642318	0.81[ASN][1000 genomes]
rs11859577	0.98[ASN][1000 genomes]
rs11862722	0.83[ASN][1000 genomes]
rs12051191	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12597421	0.95[EUR][1000 genomes]
rs12597942	0.92[EUR][1000 genomes]
rs12918435	0.82[ASN][1000 genomes]
rs4286117	0.94[EUR][1000 genomes]
rs4441287	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4461085	0.93[EUR][1000 genomes]
rs4486901	0.82[ASN][1000 genomes]
rs4617874	0.87[ASN][1000 genomes]
rs4888065	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4889071	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4889072	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4889073	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4889074	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs4889075	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs4889077	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6564725	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7189965	0.88[ASN][1000 genomes]
rs7194550	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7196219	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9929398	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573294	chr16:80005642-80131944	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80062000-80075000	Weak transcription	NH-A	brain
2	chr16:80064000-80072400	Weak transcription	Esophagus	oesophagus
3	chr16:80064600-80073600	Weak transcription	HMEC	breast
4	chr16:80070200-80074800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr16:80070800-80074200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr16:80072000-80072800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr16:80072200-80073000	Enhancers	NHEK	skin
8	chr16:80072200-80076000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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