Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11150240	0.82[ASN][1000 genomes]
rs12051191	0.92[EUR][1000 genomes]
rs12597421	0.93[EUR][1000 genomes]
rs12597942	0.90[EUR][1000 genomes]
rs4134366	0.97[ASN][1000 genomes]
rs4286117	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4427815	0.97[ASN][1000 genomes]
rs4441287	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4461085	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4617874	0.83[ASN][1000 genomes]
rs4888065	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4888066	0.91[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4889071	0.91[CEU][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4889072	0.91[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4889073	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4889074	0.86[CHB][hapmap]
rs4889075	0.86[CHB][hapmap]
rs4889077	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs4889079	0.96[ASN][1000 genomes]
rs4889081	0.81[ASN][1000 genomes]
rs6564726	0.80[ASN][1000 genomes]
rs7189965	0.84[ASN][1000 genomes]
rs7194550	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7196219	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573294	chr16:80005642-80131944	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80072800-80085200	Weak transcription	Esophagus	oesophagus
2	chr16:80079200-80081400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr16:80079800-80081600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr16:80081000-80092200	Weak transcription	Right Atrium	heart
5	chr16:80081200-80085000	Weak transcription	Ovary	ovary

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