Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11150240	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11639913	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11642318	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11859577	0.85[EUR][1000 genomes]
rs11862722	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12918435	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28396518	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4134366	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4427815	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4486901	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4617874	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4889074	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4889075	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4889077	0.90[EUR][1000 genomes]
rs4889079	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6564725	0.81[ASN][1000 genomes]
rs6564726	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7189965	0.91[EUR][1000 genomes]
rs9921252	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9929398	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573294	chr16:80005642-80131944	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80072800-80085200	Weak transcription	Esophagus	oesophagus
2	chr16:80081000-80092200	Weak transcription	Right Atrium	heart
3	chr16:80081200-80085000	Weak transcription	Ovary	ovary

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