Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11150240	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11639913	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11642318	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11859577	0.91[EUR][1000 genomes]
rs11862722	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12918435	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4134366	0.94[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs4427815	0.94[EUR][1000 genomes]
rs4441287	0.81[ASN][1000 genomes]
rs4486901	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4617874	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4889074	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4889075	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4889077	0.94[EUR][1000 genomes]
rs4889079	0.94[EUR][1000 genomes]
rs4889081	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6564726	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7189965	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9921252	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9929398	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573294	chr16:80005642-80131944	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80072200-80076000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr16:80072800-80085200	Weak transcription	Esophagus	oesophagus
3	chr16:80073200-80078000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr16:80074200-80076000	Enhancers	NHEK	skin
5	chr16:80074200-80076800	Enhancers	Placenta Amnion	Placenta Amnion
6	chr16:80074400-80075800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr16:80074400-80076400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr16:80075000-80075800	Enhancers	NH-A	brain
9	chr16:80075000-80079600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr16:80075200-80075800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr16:80075400-80076000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr16:80075400-80076200	Enhancers	Small Intestine	intestine
13	chr16:80075600-80076000	Enhancers	Fetal Intestine Large	intestine

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