Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:80083316..80085801-chr16:80086911..80089877,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11150240	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11639913	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11642318	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11859577	0.86[EUR][1000 genomes]
rs11862722	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12918435	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28396518	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4134366	0.94[EUR][1000 genomes]
rs4286117	0.90[ASN][1000 genomes]
rs4427815	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4461085	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4486901	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4617874	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4889071	0.85[MEX][hapmap]
rs4889074	0.92[CEU][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4889075	0.92[CEU][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4889077	0.92[CEU][hapmap];0.84[GIH][hapmap];0.85[MEX][hapmap];0.93[TSI][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4889079	0.94[EUR][1000 genomes]
rs4889081	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6564726	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7189965	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9929398	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573294	chr16:80005642-80131944	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9921252	DYNLRB2	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80081000-80092200	Weak transcription	Right Atrium	heart
2	chr16:80085200-80085600	Enhancers	Ovary	ovary

Quick Search: