Variant report

Variant	rs4427815
Chromosome Location	chr16:80078113-80078114
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:80061826..80063381-chr16:80077866..80079603,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11150240	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11639913	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11642318	0.88[EUR][1000 genomes]
rs11859577	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11862722	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12918435	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28396518	0.94[EUR][1000 genomes]
rs4134366	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4441287	0.87[ASN][1000 genomes]
rs4486901	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4617874	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4888066	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs4889071	0.81[CHD][hapmap];0.95[JPT][hapmap];0.89[MEX][hapmap]
rs4889072	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs4889074	0.96[CEU][hapmap];0.87[CHB][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4889075	0.96[CEU][hapmap];0.87[CHB][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4889077	0.96[CEU][hapmap];0.83[CHB][hapmap];0.82[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.89[MEX][hapmap];0.81[MKK][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4889079	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4889081	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6564725	0.97[ASN][1000 genomes]
rs6564726	0.91[EUR][1000 genomes]
rs7189965	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9921252	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9929398	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573294	chr16:80005642-80131944	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80072800-80085200	Weak transcription	Esophagus	oesophagus
2	chr16:80075000-80079600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr16:80076000-80078200	Enhancers	Fetal Stomach	stomach
4	chr16:80076000-80079600	Weak transcription	Fetal Intestine Large	intestine
5	chr16:80076400-80081200	Enhancers	Ovary	ovary
6	chr16:80076800-80078200	Enhancers	Stomach Smooth Muscle	stomach

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