Variant report

Variant	rs4617874
Chromosome Location	chr16:80076479-80076480
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:80071404..80074131-chr16:80075886..80077558,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11150240	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11639913	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11642318	0.86[EUR][1000 genomes]
rs11859577	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11862722	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12918435	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28396518	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4134366	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4427815	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4441287	0.95[ASN][1000 genomes]
rs4486901	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4888065	0.87[ASN][1000 genomes]
rs4888066	0.87[ASN][1000 genomes]
rs4889071	0.87[ASN][1000 genomes]
rs4889072	0.87[ASN][1000 genomes]
rs4889073	0.87[ASN][1000 genomes]
rs4889074	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4889075	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4889077	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4889079	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4889081	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6564725	0.83[ASN][1000 genomes]
rs6564726	0.90[EUR][1000 genomes]
rs7189965	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9921252	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9929398	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573294	chr16:80005642-80131944	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80072800-80085200	Weak transcription	Esophagus	oesophagus
2	chr16:80073200-80078000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr16:80074200-80076800	Enhancers	Placenta Amnion	Placenta Amnion
4	chr16:80075000-80079600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr16:80075800-80077400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr16:80076000-80078200	Enhancers	Fetal Stomach	stomach
7	chr16:80076000-80079600	Weak transcription	Fetal Intestine Large	intestine
8	chr16:80076400-80081200	Enhancers	Ovary	ovary

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