Variant report

Variant	rs4286873
Chromosome Location	chr7:103015677-103015678
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10234363	0.84[EUR][1000 genomes]
rs10242349	0.84[EUR][1000 genomes]
rs10249921	0.84[EUR][1000 genomes]
rs10279441	0.84[EUR][1000 genomes]
rs1476678	1.00[GIH][hapmap]
rs17156420	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs28375913	1.00[ASW][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28675125	0.84[EUR][1000 genomes]
rs58418722	0.80[EUR][1000 genomes]
rs6942876	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6975450	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030446	chr7:102932689-103221638	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102989800-103021200	Weak transcription	Fetal Heart	heart
2	chr7:103009000-103017200	Weak transcription	Fetal Brain Male	brain
3	chr7:103009000-103019400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:103009000-103021000	Weak transcription	Gastric	stomach
5	chr7:103009000-103021000	Weak transcription	Pancreas	Pancrea
6	chr7:103009000-103021200	Weak transcription	Fetal Lung	lung
7	chr7:103009000-103029200	Weak transcription	Spleen	Spleen
8	chr7:103009200-103018000	Weak transcription	Brain Substantia Nigra	brain
9	chr7:103009200-103020800	Weak transcription	HepG2	liver
10	chr7:103010000-103019000	Weak transcription	K562	blood
11	chr7:103010800-103021000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr7:103011200-103019600	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr7:103015200-103016000	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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