Variant report

Variant	rs10279441
Chromosome Location	chr7:103003415-103003416
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:102986418..102988038-chr7:103002677..103005310,2	MCF-7	breast:
2	chr7:103002267..103005655-chr7:103007426..103011602,5	MCF-7	breast:
3	chr7:102990213..102992153-chr7:103000680..103003475,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10234363	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10242349	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10249921	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17136070	0.88[EUR][1000 genomes]
rs17156420	0.91[EUR][1000 genomes]
rs1968196	0.91[EUR][1000 genomes]
rs1968197	0.86[EUR][1000 genomes]
rs28397594	0.88[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs28675125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3864442	0.91[EUR][1000 genomes]
rs3959192	0.88[EUR][1000 genomes]
rs4286873	0.84[EUR][1000 genomes]
rs57770439	0.88[EUR][1000 genomes]
rs58202498	0.88[EUR][1000 genomes]
rs58418722	0.95[EUR][1000 genomes]
rs58443652	0.93[EUR][1000 genomes]
rs59245803	0.88[EUR][1000 genomes]
rs60020835	0.88[EUR][1000 genomes]
rs60080018	0.88[EUR][1000 genomes]
rs60366734	0.88[EUR][1000 genomes]
rs60383417	0.88[EUR][1000 genomes]
rs6942876	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6960317	0.84[EUR][1000 genomes]
rs6975450	0.98[EUR][1000 genomes]
rs6978467	0.84[EUR][1000 genomes]
rs6978540	0.82[EUR][1000 genomes]
rs6978608	0.84[EUR][1000 genomes]
rs6979451	0.84[EUR][1000 genomes]
rs7789727	0.86[EUR][1000 genomes]
rs7801094	0.86[EUR][1000 genomes]
rs7810936	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030446	chr7:102932689-103221638	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102989000-103006200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:102989200-103006200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:102989200-103007800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:102989200-103010600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:102989200-103011400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr7:102989200-103013200	Weak transcription	Stomach Mucosa	stomach
7	chr7:102989600-103007000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr7:102989800-103021200	Weak transcription	Fetal Heart	heart
9	chr7:102990600-103010600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:102990800-103011200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr7:102991000-103010800	Strong transcription	HUES48 Cell Line	embryonic stem cell
12	chr7:102991000-103011400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr7:102991200-103010200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr7:102991400-103009000	Strong transcription	A549	lung
15	chr7:102991400-103009400	Strong transcription	Primary B cells from peripheral blood	blood
16	chr7:102991400-103011200	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr7:102991400-103011400	Strong transcription	Rectal Mucosa Donor 29	rectum
18	chr7:102991400-103011400	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr7:102991400-103011600	Strong transcription	Fetal Thymus	thymus
20	chr7:102991600-103010600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr7:102991600-103010800	Strong transcription	NH-A	brain
22	chr7:102991600-103011200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr7:102991600-103011200	Strong transcription	Muscle Satellite Cultured Cells	--
24	chr7:102991800-103007600	Weak transcription	Psoas Muscle	Psoas
25	chr7:102991800-103011200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr7:102992000-103009400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr7:102992000-103010400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr7:102992000-103010400	Strong transcription	Osteobl	bone
29	chr7:102992000-103011200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr7:102992400-103009800	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr7:102992400-103011400	Strong transcription	Adipose Nuclei	Adipose
32	chr7:102992600-103005600	Strong transcription	K562	blood
33	chr7:102992800-103010200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr7:102992800-103010200	Strong transcription	Placenta	Placenta
35	chr7:102992800-103011200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr7:102993000-103010600	Strong transcription	Fetal Intestine Large	intestine
37	chr7:102993000-103010800	Strong transcription	Duodenum Mucosa	Duodenum
38	chr7:102993000-103011200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr7:102993400-103004600	Weak transcription	Gastric	stomach
40	chr7:102993600-103010600	Strong transcription	Dnd41	blood
41	chr7:102993600-103010800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr7:102993800-103010400	Strong transcription	Primary T helper cells PMA-I stimulated	--
43	chr7:102994000-103004600	Weak transcription	Lung	lung
44	chr7:102994600-103010200	Strong transcription	NHDF-Ad	bronchial
45	chr7:102994600-103011200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr7:102994800-103010600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr7:102994800-103010600	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr7:102994800-103010600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr7:102995000-103011400	Strong transcription	Liver	Liver
50	chr7:102995600-103003800	Weak transcription	Fetal Brain Male	brain

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