Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:102799119..102800765-chr7:102801413..102803528,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NAPEPLD-4	chr7:102802394-102803107	NONHSAT122539

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10234363	0.88[EUR][1000 genomes]
rs10242349	0.88[EUR][1000 genomes]
rs10249921	0.88[EUR][1000 genomes]
rs10279441	0.88[EUR][1000 genomes]
rs17156420	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1968196	0.93[EUR][1000 genomes]
rs1968197	0.98[EUR][1000 genomes]
rs28397594	0.95[EUR][1000 genomes]
rs28675125	0.88[EUR][1000 genomes]
rs3864442	0.93[EUR][1000 genomes]
rs3959192	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57770439	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58202498	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58418722	0.88[EUR][1000 genomes]
rs58443652	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59245803	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60020835	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60080018	1.00[EUR][1000 genomes]
rs60366734	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60383417	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6960317	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6975450	0.86[EUR][1000 genomes]
rs6978467	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6978540	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6978608	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6979451	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7789727	0.98[EUR][1000 genomes]
rs7801094	0.98[EUR][1000 genomes]
rs7810936	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv831084	chr7:102778908-102964970	Strong transcription Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv966873	chr7:102798505-102805358	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3403436	chr7:102798516-102803314	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv608063	chr7:102800697-102807435	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv608064	chr7:102800799-102807435	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102790200-102803200	Weak transcription	Gastric	stomach
2	chr7:102794800-102803200	Weak transcription	Fetal Intestine Large	intestine
3	chr7:102801600-102803400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:102801800-102803200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr7:102802000-102803200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:102802000-102804800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr7:102802200-102802800	Weak transcription	K562	blood
8	chr7:102802200-102803200	Enhancers	Osteobl	bone
9	chr7:102802200-102803600	Enhancers	Fetal Intestine Small	intestine
10	chr7:102802400-102803600	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr7:102802400-102804600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr7:102802400-102804600	Enhancers	NH-A	brain
13	chr7:102802600-102802800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr7:102802600-102803800	Enhancers	NHEK	skin

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