Variant report

Variant	rs60020835
Chromosome Location	chr7:102804743-102804744
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:102788301..102790522-chr7:102804564..102807525,2	K562	blood:
2	chr7:102789022..102791029-chr7:102804564..102807367,2	K562	blood:

Variant related genes	Relation type
ENSG00000161048	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10234363	0.88[EUR][1000 genomes]
rs10242349	0.88[EUR][1000 genomes]
rs10249921	0.88[EUR][1000 genomes]
rs10279441	0.88[EUR][1000 genomes]
rs17136070	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17156420	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1968196	0.93[EUR][1000 genomes]
rs1968197	0.98[EUR][1000 genomes]
rs28397594	0.95[EUR][1000 genomes]
rs28675125	0.88[EUR][1000 genomes]
rs3864442	0.93[EUR][1000 genomes]
rs3959192	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57770439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58202498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58418722	0.88[EUR][1000 genomes]
rs58443652	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59245803	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60080018	1.00[EUR][1000 genomes]
rs60366734	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60383417	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6960317	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6975450	0.86[EUR][1000 genomes]
rs6978467	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6978540	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6978608	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6979451	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7789727	0.98[EUR][1000 genomes]
rs7801094	0.98[EUR][1000 genomes]
rs7810936	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv831084	chr7:102778908-102964970	Strong transcription Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv966873	chr7:102798505-102805358	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv608063	chr7:102800697-102807435	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv608064	chr7:102800799-102807435	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102802000-102804800	Enhancers	Muscle Satellite Cultured Cells	--
2	chr7:102803600-102805000	Enhancers	Osteobl	bone
3	chr7:102803600-102807400	Weak transcription	Adipose Nuclei	Adipose
4	chr7:102803800-102805200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:102804600-102807400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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