Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10234363	0.93[EUR][1000 genomes]
rs10242349	0.93[EUR][1000 genomes]
rs10249921	0.93[EUR][1000 genomes]
rs10279441	0.93[EUR][1000 genomes]
rs17136070	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17156420	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1968196	0.98[EUR][1000 genomes]
rs1968197	0.93[EUR][1000 genomes]
rs28397594	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28675125	0.93[EUR][1000 genomes]
rs3864442	0.98[EUR][1000 genomes]
rs3959192	0.95[EUR][1000 genomes]
rs57770439	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58202498	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58418722	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs58443652	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59245803	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59829064	0.87[AFR][1000 genomes]
rs60020835	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60080018	0.95[EUR][1000 genomes]
rs60366734	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60383417	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6960317	0.91[EUR][1000 genomes]
rs6975450	0.91[EUR][1000 genomes]
rs6978467	0.91[EUR][1000 genomes]
rs6978540	0.88[EUR][1000 genomes]
rs6978608	0.91[EUR][1000 genomes]
rs6979451	0.91[EUR][1000 genomes]
rs7789727	0.93[EUR][1000 genomes]
rs7801094	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv831084	chr7:102778908-102964970	Strong transcription Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1030446	chr7:102932689-103221638	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102931800-102937400	Weak transcription	Fetal Brain Male	brain
2	chr7:102932800-102937400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr7:102933200-102937400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr7:102933600-102937200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:102933600-102937400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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