Variant report

Variant	rs6942876
Chromosome Location	chr7:103012733-103012734
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:103005779..103008431-chr7:103012663..103014193,2	MCF-7	breast:
2	chr7:103010338..103013174-chr7:103051030..103053015,2	K562	blood:
3	chr7:102937192..102939533-chr7:103011262..103013265,2	MCF-7	breast:
4	chr7:102998363..103000143-chr7:103011384..103014168,2	K562	blood:
5	chr7:103005337..103007018-chr7:103010875..103013164,2	K562	blood:

Variant related genes	Relation type
ENSG00000105819	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10234363	0.84[EUR][1000 genomes]
rs10242349	0.84[EUR][1000 genomes]
rs10249921	0.84[EUR][1000 genomes]
rs10279441	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1476678	1.00[GIH][hapmap]
rs17156420	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs28375913	0.93[ASW][hapmap];1.00[GIH][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28675125	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4286873	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58418722	0.80[EUR][1000 genomes]
rs6975450	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030446	chr7:102932689-103221638	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102989200-103013200	Weak transcription	Stomach Mucosa	stomach
2	chr7:102989800-103021200	Weak transcription	Fetal Heart	heart
3	chr7:103005000-103014800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr7:103009000-103013000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:103009000-103013000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:103009000-103013000	Weak transcription	Brain Angular Gyrus	brain
7	chr7:103009000-103013400	Weak transcription	Ovary	ovary
8	chr7:103009000-103014800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr7:103009000-103014800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr7:103009000-103014800	Weak transcription	Aorta	Aorta
11	chr7:103009000-103014800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr7:103009000-103014800	Weak transcription	Right Ventricle	heart
13	chr7:103009000-103014800	Weak transcription	A549	lung
14	chr7:103009000-103017200	Weak transcription	Fetal Brain Male	brain
15	chr7:103009000-103019400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr7:103009000-103021000	Weak transcription	Gastric	stomach
17	chr7:103009000-103021000	Weak transcription	Pancreas	Pancrea
18	chr7:103009000-103021200	Weak transcription	Fetal Lung	lung
19	chr7:103009000-103029200	Weak transcription	Spleen	Spleen
20	chr7:103009200-103013000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr7:103009200-103014200	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr7:103009200-103014600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr7:103009200-103014800	Weak transcription	Primary T cells from cord blood	blood
24	chr7:103009200-103015400	Weak transcription	Primary hematopoietic stem cells	blood
25	chr7:103009200-103018000	Weak transcription	Brain Substantia Nigra	brain
26	chr7:103009200-103020800	Weak transcription	HepG2	liver
27	chr7:103009400-103012800	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr7:103009400-103012800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr7:103009400-103013000	Weak transcription	Primary B cells from peripheral blood	blood
30	chr7:103009600-103013000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr7:103009600-103014800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr7:103010000-103019000	Weak transcription	K562	blood
33	chr7:103010200-103013200	Weak transcription	NHDF-Ad	bronchial
34	chr7:103010400-103012800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr7:103010400-103012800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr7:103010400-103013000	Weak transcription	Stomach Smooth Muscle	stomach
37	chr7:103010400-103014600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr7:103010600-103012800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr7:103010600-103012800	Weak transcription	Fetal Muscle Leg	muscle
40	chr7:103010600-103013000	Weak transcription	Brain Hippocampus Middle	brain
41	chr7:103010600-103013400	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr7:103010600-103014000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr7:103010600-103014200	Weak transcription	Fetal Intestine Large	intestine
44	chr7:103010600-103014200	Weak transcription	Dnd41	blood
45	chr7:103010600-103014800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr7:103010800-103013000	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr7:103010800-103013000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr7:103010800-103013200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr7:103010800-103014000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr7:103010800-103015000	Weak transcription	NH-A	brain

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