Variant report

Variant	rs4301617
Chromosome Location	chr1:90666359-90666360
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10922806	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10922808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12121982	0.96[EUR][1000 genomes]
rs12139290	0.94[EUR][1000 genomes]
rs4475731	0.81[EUR][1000 genomes]
rs61770612	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61770613	0.95[EUR][1000 genomes]
rs61770614	0.96[EUR][1000 genomes]
rs61770626	0.94[EUR][1000 genomes]
rs61770627	0.94[EUR][1000 genomes]
rs61770628	0.94[EUR][1000 genomes]
rs61770633	0.89[EUR][1000 genomes]
rs61770635	0.81[EUR][1000 genomes]
rs72646166	0.81[EUR][1000 genomes]
rs74100368	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7532538	0.81[EUR][1000 genomes]
rs7540662	0.81[EUR][1000 genomes]
rs7546643	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830570	chr1:90525215-90685526	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:90664000-90666400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:90664600-90666400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr1:90664800-90666800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:90664800-90667000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr1:90665000-90666400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr1:90665000-90666600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr1:90665800-90666400	Enhancers	Fetal Kidney	kidney
8	chr1:90665800-90666800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr1:90665800-90667000	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr1:90666000-90672200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr1:90666200-90666600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr1:90666200-90666800	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr1:90666200-90666800	Enhancers	Gastric	stomach
14	chr1:90666200-90666800	Enhancers	Lung	lung
15	chr1:90666200-90666800	Enhancers	Pancreas	Pancrea
16	chr1:90666200-90667200	Enhancers	Duodenum Mucosa	Duodenum
17	chr1:90666200-90667200	Enhancers	Fetal Lung	lung
18	chr1:90666200-90667400	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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