Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10922806	0.80[EUR][1000 genomes]
rs10922808	0.81[EUR][1000 genomes]
rs12121982	0.84[EUR][1000 genomes]
rs12139290	0.87[EUR][1000 genomes]
rs4301617	0.81[EUR][1000 genomes]
rs4589092	0.86[ASN][1000 genomes]
rs61770612	0.80[EUR][1000 genomes]
rs61770613	0.83[EUR][1000 genomes]
rs61770614	0.84[EUR][1000 genomes]
rs61770626	0.87[EUR][1000 genomes]
rs61770627	0.87[EUR][1000 genomes]
rs61770628	0.87[EUR][1000 genomes]
rs61770633	0.91[EUR][1000 genomes]
rs61770635	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72646160	0.84[ASN][1000 genomes]
rs72646161	0.86[ASN][1000 genomes]
rs72646166	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs74100368	0.81[EUR][1000 genomes]
rs7532538	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7540662	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7546643	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524317	chr1:90729744-90836739	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv521123	chr1:90770566-90836739	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:90779200-90780400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search: