Variant report
| Variant | rs4589092 |
|---|---|
| Chromosome Location | chr1:90773106-90773107 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10754304 | 1.00[EUR][1000 genomes] |
| rs1396319 | 1.00[EUR][1000 genomes] |
| rs1508504 | 0.89[EUR][1000 genomes] |
| rs1703027 | 1.00[EUR][1000 genomes] |
| rs17131012 | 1.00[EUR][1000 genomes] |
| rs1988676 | 1.00[EUR][1000 genomes] |
| rs2136091 | 1.00[EUR][1000 genomes] |
| rs4475731 | 0.86[ASN][1000 genomes] |
| rs483211 | 1.00[EUR][1000 genomes] |
| rs506796 | 1.00[EUR][1000 genomes] |
| rs552443 | 1.00[EUR][1000 genomes] |
| rs569106 | 1.00[EUR][1000 genomes] |
| rs61770635 | 0.87[ASN][1000 genomes] |
| rs6676374 | 1.00[EUR][1000 genomes] |
| rs699532 | 1.00[EUR][1000 genomes] |
| rs699533 | 1.00[EUR][1000 genomes] |
| rs699546 | 1.00[EUR][1000 genomes] |
| rs72646159 | 1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs72646160 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs72646161 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs72646162 | 0.80[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs72646166 | 0.88[ASN][1000 genomes] |
| rs72646167 | 1.00[EUR][1000 genomes] |
| rs72646168 | 1.00[EUR][1000 genomes] |
| rs7416000 | 1.00[EUR][1000 genomes] |
| rs7532538 | 0.86[ASN][1000 genomes] |
| rs7540662 | 0.86[ASN][1000 genomes] |
| rs7547180 | 1.00[EUR][1000 genomes] |
| rs997077 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv546803 | chr1:90679734-90777717 | Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv524317 | chr1:90729744-90836739 | Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv521123 | chr1:90770566-90836739 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:90770800-90777600 | Weak transcription | Fetal Brain Male | brain |
