Variant report
Variant | rs699546 |
---|---|
Chromosome Location | chr1:90901199-90901200 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10754304 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs1396319 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs1508504 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs1567293 | 1.00[AMR][1000 genomes];0.94[ASN][1000 genomes] |
rs1703027 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs17131012 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs17131079 | 0.81[MEX][hapmap] |
rs1988676 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs2136091 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs4589092 | 1.00[EUR][1000 genomes] |
rs483211 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs506796 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs552443 | 1.00[EUR][1000 genomes] |
rs569106 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6676374 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs699532 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs699533 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs72646159 | 1.00[EUR][1000 genomes] |
rs72646160 | 1.00[EUR][1000 genomes] |
rs72646161 | 1.00[EUR][1000 genomes] |
rs72646167 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs72646168 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs7416000 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs7522543 | 0.92[ASN][1000 genomes] |
rs7547180 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs986557 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes] |
rs997077 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv3394726 | chr1:90811671-91019675 | Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
2 | esv1801569 | chr1:90819992-90983299 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
3 | esv1808806 | chr1:90819992-90983299 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
4 | esv1822918 | chr1:90819992-90983299 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
5 | esv1850863 | chr1:90819992-90983299 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
6 | esv2757740 | chr1:90819992-90983299 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
7 | esv2758949 | chr1:90819992-90983299 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
8 | nsv427697 | chr1:90819992-90983299 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
9 | nsv428124 | chr1:90819992-90983299 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
10 | esv1811797 | chr1:90819992-91008105 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
11 | nsv432487 | chr1:90824652-90931765 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:90899800-90901400 | Enhancers | Dnd41 | blood |
2 | chr1:90900200-90901800 | Enhancers | Cortex derived primary cultured neurospheres | brain |
3 | chr1:90901000-90901400 | Enhancers | Ganglion Eminence derived primary cultured neurospheres | brain |